Factsheet for Zm00001d021633_P006

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009512_P001	Maize	mitochondrion	24.52	86.36
Zm00001d018546_P001	Maize	endoplasmic reticulum, extracellular	24.73	80.99
Zm00001d010739_P001	Maize	mitochondrion	20.86	78.23
Zm00001d016252_P001	Maize	nucleus	61.94	76.6
Zm00001d006496_P004	Maize	nucleus	85.38	73.11
TraesCS2D01G227900.5	Wheat	nucleus	68.82	68.97
TraesCS2B01G247400.4	Wheat	nucleus	68.6	68.75
TraesCS2A01G221900.2	Wheat	nucleus	68.17	68.32
Os07t0516900-01	Rice	plastid	34.19	63.35
GSMUA_Achr9P24980_001	Banana	cytosol	44.73	62.84
Zm00001d021149_P001	Maize	cytosol	21.94	61.82
GSMUA_Achr6P29410_001	Banana	nucleus	43.23	61.28
Zm00001d013812_P001	Maize	nucleus	49.68	56.9
Zm00001d049416_P001	Maize	extracellular, nucleus	52.47	53.51
GSMUA_Achr8P03580_001	Banana	cytosol, mitochondrion, nucleus	46.45	53.07
Zm00001d026346_P002	Maize	extracellular	48.6	52.8
GSMUA_Achr10P...	Banana	nucleus	48.82	52.3
Zm00001d002244_P003	Maize	nucleus	49.46	51.34
HORVU2Hr1G046380.2	Barley	nucleus	46.24	48.75
Zm00001d005912_P001	Maize	cytosol, nucleus, peroxisome, plastid	41.29	45.28
Zm00001d017181_P001	Maize	mitochondrion, nucleus, plastid	25.81	44.78
Zm00001d020748_P002	Maize	plasma membrane	41.08	44.11
Zm00001d007929_P002	Maize	nucleus	33.98	44.01
Zm00001d050838_P001	Maize	plastid	38.49	41.63
Zm00001d025551_P002	Maize	plastid	38.71	39.82
Zm00001d016897_P002	Maize	endoplasmic reticulum, nucleus, peroxisome, plastid	38.71	37.97
Zm00001d031525_P004	Maize	nucleus	24.3	24.25
Zm00001d026528_P001	Maize	plastid	11.4	24.09
Zm00001d048824_P004	Maize	nucleus	22.8	23.71
Zm00001d027869_P002	Maize	nucleus	36.99	22.54
Zm00001d049759_P003	Maize	nucleus	21.72	22.05
Zm00001d026522_P001	Maize	nucleus	9.68	18.44
Zm00001d014094_P002	Maize	extracellular, plasma membrane	12.69	16.53
Zm00001d032807_P001	Maize	nucleus	12.47	16.16
Zm00001d019824_P004	Maize	cytosol	19.35	13.72
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	19.14	13.65
Zm00001d005276_P007	Maize	cytosol	18.92	13.46
Zm00001d046487_P001	Maize	cytosol	18.49	13.37
Zm00001d025801_P005	Maize	cytosol, plastid	18.49	13.19
Zm00001d047790_P001	Maize	plastid	17.63	11.16

Protein Annotations

EntrezGene:100274401	MapMan:16.9.4	Gene3D:3.30.70.330	UniProt:B4G0Q5	EMBL:BT042943	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
ProteinID:ONM57738.1	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43955	PANTHER:PTHR43955:SF8	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00017B7591	EnsemblPlantsGene:Zm00001d021633	EnsemblPlants:Zm00001d021633_P006
EnsemblPlants:Zm00001d021633_T006	SEG:seg	:	:	:	:

Description

Polyadenylate-binding protein RBP45C

Coordinates

chr7:+:158634600..158639128

Molecular Weight (calculated)

51963.2 Da

IEP (calculated)

6.741

GRAVY (calculated)

-0.922

Length

465 amino acids

Sequence
(BLAST)

001: MQPPHQPPMN GQHSQPPPQG PVVPMPPQQQ APPLPYYQQQ QAPQYYQQAL PQPWGQQQQY AAPPPQYPPP PQTQHYATPP QQYAPLPQQQ YAPPPQQQYA
101: PSPYGTTPGS GEVRTLWIGD LQHWMDENYL HYNAFAAVAQ QIASVKIIRN KQTGHSEGYG FIEFYSRAAA EHTLMNFNGQ MMPNVEMTFK LNWASASTGD
201: KRGDSGSDRT IFVGDLAHDV TDSMLEDVFR AKYPSVRGAN VVVDRMTGWP KGFGFVRFGD LNEQARAMTE MNGMLLSTRQ MRIGAAANKK NRDAQQTYAT
301: DGAYQSSKGN SSENDPNNTT VFVGGLDSNV NEEYLRQIFT PYGEISYVKI PVGKHCGFVQ FTSRSCAEEA IRMLNGSQVG GQKVRLSWGR SPQNRQASQH
401: DANNQYNGNS YYGYQQPGYE GYGYGASSAQ DPSMQNYYGY SGCGNYEQQQ PTQEQQLQQP PPPQH

Best Arabidopsis Sequence Match ( AT5G54900.1 )
(BLAST)

001: MQQPPSNAAG AGQIPSGQQH LWMMMQQQQQ QQQMQLSAAP LGQHQYGIGS QNPGSASDVK SLWIGDLQQW MDENYIMSVF AQSGEATSAK VIRNKLTGQS
101: EGYGFIEFVS HSVAERVLQT YNGAPMPSTE QTFRLNWAQA GAGEKRFQTE GPDHTIFVGD LAPEVTDYML SDTFKNVYGS VKGAKVVLDR TTGRSKGYGF
201: VRFADENEQM RAMTEMNGQY CSTRPMRIGP AANKNALPMQ PAMYQNTQGA NAGDNDPNNT TIFVGGLDAN VTDDELKSIF GQFGELLHVK IPPGKRCGFV
301: QYANKASAEH ALSVLNGTQL GGQSIRLSWG RSPNKQSDQA QWNGGGYYGY PPQPQGGYGY AAQPPTQDPN AYYGGYTGYG NYQQQRQ

Arabidopsis Description

RBP45APolyadenylate-binding protein RBP45A [Source:UniProtKB/Swiss-Prot;Acc:Q9FPJ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.