Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G227900.5 | Wheat | nucleus | 98.28 | 98.28 |
| TraesCS2B01G247400.4 | Wheat | nucleus | 98.06 | 98.06 |
| Os07t0516900-01 | Rice | plastid | 41.38 | 76.49 |
| Zm00001d009512_P001 | Maize | mitochondrion | 19.83 | 69.7 |
| KXG36337 | Sorghum | nucleus | 71.55 | 69.6 |
| GSMUA_Achr9P24980_001 | Banana | cytosol | 48.92 | 68.58 |
| Zm00001d021633_P006 | Maize | nucleus | 68.32 | 68.17 |
| GSMUA_Achr6P29410_001 | Banana | nucleus | 47.84 | 67.68 |
| Zm00001d010739_P001 | Maize | mitochondrion | 17.89 | 66.94 |
| HORVU2Hr1G046380.2 | Barley | nucleus | 62.93 | 66.21 |
| Zm00001d018546_P001 | Maize | endoplasmic reticulum, extracellular | 20.04 | 65.49 |
| TraesCS7A01G295700.3 | Wheat | plastid | 41.38 | 61.74 |
| Zm00001d006496_P004 | Maize | nucleus | 70.91 | 60.59 |
| GSMUA_Achr8P03580_001 | Banana | cytosol, mitochondrion, nucleus | 50.0 | 57.0 |
| TraesCS6A01G100800.1 | Wheat | nucleus | 50.22 | 56.83 |
| GSMUA_Achr10P... | Banana | nucleus | 53.02 | 56.68 |
| TraesCS2A01G473000.1 | Wheat | nucleus | 51.72 | 55.05 |
| Zm00001d016252_P001 | Maize | nucleus | 44.4 | 54.79 |
| TraesCS5A01G243500.1 | Wheat | nucleus | 39.66 | 53.8 |
| TraesCS6A01G204400.1 | Wheat | mitochondrion | 38.79 | 47.49 |
| TraesCS4A01G014200.1 | Wheat | nucleus | 42.24 | 47.12 |
| TraesCS2A01G317700.2 | Wheat | plastid | 39.66 | 43.4 |
| TraesCS2A01G256500.1 | Wheat | nucleus | 31.9 | 41.57 |
| Zm00001d017181_P001 | Maize | mitochondrion, nucleus, plastid | 21.77 | 37.69 |
| TraesCS7A01G252200.1 | Wheat | mitochondrion, nucleus | 23.71 | 24.61 |
| TraesCS4A01G150000.1 | Wheat | mitochondrion | 23.71 | 24.55 |
| TraesCS2A01G169100.1 | Wheat | nucleus | 22.2 | 24.07 |
| TraesCS1A01G143500.1 | Wheat | nucleus | 13.36 | 16.85 |
| TraesCS3A01G076800.1 | Wheat | mitochondrion, nucleus, plasma membrane, plastid | 19.18 | 15.95 |
| TraesCS7A01G288700.1 | Wheat | nucleus | 20.91 | 14.65 |
| TraesCS2A01G359000.1 | Wheat | cytosol | 19.83 | 13.83 |
| TraesCS5A01G161800.2 | Wheat | nucleus | 19.18 | 13.67 |
| TraesCS4A01G099500.1 | Wheat | cytosol | 16.59 | 11.81 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G221900.2 | EnsemblPlantsGene:TraesCS2A01G221900 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR43955 |
| PANTHER:PTHR43955:SF8 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| TIGR:cd12344 | TIGR:cd12345 | TIGR:cd12346 | MapMan:16.9.4 | : | : |
Description
No Description!
Coordinates
chr2A:+:212642747..212646699
Molecular Weight (calculated)
50949.9 Da
IEP (calculated)
5.645
GRAVY (calculated)
-0.927
Length
464 amino acids
Sequence
(BLAST)
(BLAST)
001: MQPTYQPPMN GQHAPQPQAS GAPPPPLQQP PPPPQYYQAP PQYYQQGPPP AMWGHPQQHM PPQYAPPPPQ YAPQPPQQYA PPPQHYAPPP PQYGAQMAGG
101: PPSGGEDIRS LWIGDLQYWM DETYLYNAFA PVGPQQVTSV KIIRNKHTGQ PEGYGFIEFQ SRAAAEYALG TFNGQMMPNV EQVFKLNWAS CSAGDKRGDD
201: GSDHTIFVGD LAADVTDAML EEIFKATYPS VKGANVVTDR ATGRSKGYGF VRFGDLNEQT RAMTEMNGVP LSTRQMRIGP AANKKNIGTQ QTYSTNAGYQ
301: SSQVNEAAND PNNTTIFVGG LDSNIDENYL RQVFTPYGEV GYVKIPVGKR CGFVQFTSRA CAEQAISALN GSQIGSSNVR LSWGRSQNKQ PPQQDANQGN
401: GNSYYGYQQG PDAYYGAPNA QDPSMQNYGY SGYGSYEQQQ QPSQQQQPPQ QQPPQQQQQQ PPQQ
101: PPSGGEDIRS LWIGDLQYWM DETYLYNAFA PVGPQQVTSV KIIRNKHTGQ PEGYGFIEFQ SRAAAEYALG TFNGQMMPNV EQVFKLNWAS CSAGDKRGDD
201: GSDHTIFVGD LAADVTDAML EEIFKATYPS VKGANVVTDR ATGRSKGYGF VRFGDLNEQT RAMTEMNGVP LSTRQMRIGP AANKKNIGTQ QTYSTNAGYQ
301: SSQVNEAAND PNNTTIFVGG LDSNIDENYL RQVFTPYGEV GYVKIPVGKR CGFVQFTSRA CAEQAISALN GSQIGSSNVR LSWGRSQNKQ PPQQDANQGN
401: GNSYYGYQQG PDAYYGAPNA QDPSMQNYGY SGYGSYEQQQ QPSQQQQPPQ QQPPQQQQQQ PPQQ
001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEK
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEK
Arabidopsis Description
RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.