Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G100800.1 | Wheat | nucleus | 95.18 | 72.2 |
| TraesCS7B01G199000.1 | Wheat | nucleus, plastid | 94.53 | 69.83 |
| Os08t0190200-00 | Rice | nucleus | 83.28 | 58.6 |
| HORVU7Hr1G066510.3 | Barley | plastid | 81.67 | 58.12 |
| KXG24662 | Sorghum | nucleus | 84.57 | 57.68 |
| TraesCS2A01G473000.1 | Wheat | nucleus | 79.1 | 56.42 |
| Zm00001d049416_P001 | Maize | extracellular, nucleus | 82.64 | 56.36 |
| KRH20867 | Soybean | nucleus | 62.7 | 47.68 |
| KRH51075 | Soybean | endoplasmic reticulum | 60.77 | 47.61 |
| KRH02082 | Soybean | nucleus | 60.77 | 47.01 |
| KRH11417 | Soybean | nucleus | 61.74 | 46.72 |
| CDY34835 | Canola | nucleus | 58.2 | 46.06 |
| AT1G11650.2 | Thale cress | nucleus | 59.49 | 45.68 |
| Solyc03g031720.2.1 | Tomato | nucleus | 58.52 | 44.94 |
| Bra031774.1-P | Field mustard | nucleus | 56.91 | 44.92 |
| Solyc02g080420.2.1 | Tomato | extracellular, nucleus, plastid | 59.49 | 44.79 |
| PGSC0003DMT400042504 | Potato | nucleus | 59.16 | 44.55 |
| PGSC0003DMT400013036 | Potato | nucleus | 57.23 | 44.5 |
| PGSC0003DMT400029379 | Potato | nucleus | 57.23 | 44.5 |
| Solyc10g005260.2.1 | Tomato | nucleus | 58.52 | 44.28 |
| TraesCS5A01G243500.1 | Wheat | nucleus | 46.95 | 42.69 |
| TraesCS2A01G221900.2 | Wheat | nucleus | 61.74 | 41.38 |
| TraesCS4A01G014200.1 | Wheat | nucleus | 52.41 | 39.18 |
| TraesCS6A01G204400.1 | Wheat | mitochondrion | 45.98 | 37.73 |
| TraesCS2A01G317700.2 | Wheat | plastid | 48.23 | 35.38 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 57.23 | 35.11 |
| TraesCS2A01G256500.1 | Wheat | nucleus | 38.91 | 33.99 |
| TraesCS2A01G169100.1 | Wheat | nucleus | 24.76 | 17.99 |
| TraesCS7A01G252200.1 | Wheat | mitochondrion, nucleus | 24.12 | 16.78 |
| TraesCS4A01G150000.1 | Wheat | mitochondrion | 22.83 | 15.85 |
| TraesCS1A01G143500.1 | Wheat | nucleus | 16.08 | 13.59 |
| TraesCS3A01G076800.1 | Wheat | mitochondrion, nucleus, plasma membrane, plastid | 22.19 | 12.37 |
| TraesCS7A01G288700.1 | Wheat | nucleus | 23.47 | 11.03 |
| TraesCS4A01G099500.1 | Wheat | cytosol | 22.83 | 10.89 |
| TraesCS2A01G359000.1 | Wheat | cytosol | 23.15 | 10.83 |
| TraesCS5A01G161800.2 | Wheat | nucleus | 21.54 | 10.29 |
| VIT_18s0001g10190.t01 | Wine grape | cytosol, mitochondrion | 1.61 | 4.0 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G295700.3 | EnsemblPlantsGene:TraesCS7A01G295700 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR43955 |
| PANTHER:PTHR43955:SF3 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| TIGR:cd12344 | TIGR:cd12345 | MapMan:16.9.4 | : | : | : |
Description
No Description!
Coordinates
chr7A:+:387172342..387176334
Molecular Weight (calculated)
34062.6 Da
IEP (calculated)
6.279
GRAVY (calculated)
-0.432
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MPQPQPGVAP PQWGAIPPPM PPHQLCAPAP PLLPPQMWGQ PLPPQQAAYY GRPAAPTQAP AGPNEVRTLW IGDLQYWMDE NYVYNCFAST GEVQSVKLIR
101: DKQTGQLQGY GFIEFTSHAG AERVLQTFNG AMMPNVEMAY RLNWATAGEK RDDGADYTIF VGDLAADVTD YVLQETFRVQ YPSVKGAKVV MDKLTMRPKG
201: YGFVKFGDPT EQTRAMTEMN GMLCSSRPMR IGPAANKQKA TGVQEKVPSS QGVQTDNDPS NSTIFVGGLD PNATEDVLKQ LFTPYGEVVH VKIPVGKRCG
301: FVQYASRSSA E
101: DKQTGQLQGY GFIEFTSHAG AERVLQTFNG AMMPNVEMAY RLNWATAGEK RDDGADYTIF VGDLAADVTD YVLQETFRVQ YPSVKGAKVV MDKLTMRPKG
201: YGFVKFGDPT EQTRAMTEMN GMLCSSRPMR IGPAANKQKA TGVQEKVPSS QGVQTDNDPS NSTIFVGGLD PNATEDVLKQ LFTPYGEVVH VKIPVGKRCG
301: FVQYASRSSA E
001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEK
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEK
Arabidopsis Description
RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.