Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400029379 | Potato | nucleus | 95.62 | 98.25 |
| Solyc03g031720.2.1 | Tomato | nucleus | 80.78 | 81.98 |
| Solyc02g080420.2.1 | Tomato | extracellular, nucleus, plastid | 82.24 | 81.84 |
| KRH51075 | Soybean | endoplasmic reticulum | 67.4 | 69.77 |
| KRH02082 | Soybean | nucleus | 66.67 | 68.16 |
| KRH20867 | Soybean | nucleus | 65.94 | 66.26 |
| KRH11417 | Soybean | nucleus | 64.96 | 64.96 |
| Solyc07g064510.2.1 | Tomato | plastid | 64.48 | 64.63 |
| CDY34835 | Canola | nucleus | 60.34 | 63.1 |
| AT1G11650.2 | Thale cress | nucleus | 61.56 | 62.47 |
| Bra031774.1-P | Field mustard | nucleus | 59.61 | 62.18 |
| TraesCS7A01G295700.3 | Wheat | plastid | 44.28 | 58.52 |
| Os04t0625800-01 | Rice | nucleus | 59.37 | 57.41 |
| TraesCS6A01G100800.1 | Wheat | nucleus | 56.93 | 57.07 |
| Os08t0190200-00 | Rice | nucleus | 61.31 | 57.01 |
| TraesCS6D01G081700.2 | Wheat | plastid | 56.69 | 56.83 |
| TraesCS6B01G128900.2 | Wheat | plastid | 57.42 | 56.59 |
| TraesCS7B01G199000.1 | Wheat | nucleus, plastid | 57.18 | 55.82 |
| KXG27152 | Sorghum | nucleus | 58.64 | 55.53 |
| TraesCS2D01G472700.1 | Wheat | nucleus | 58.88 | 55.5 |
| TraesCS2B01G495700.1 | Wheat | nucleus | 58.88 | 55.5 |
| TraesCS2A01G473000.1 | Wheat | nucleus | 58.64 | 55.28 |
| Zm00001d049416_P001 | Maize | extracellular, nucleus | 61.07 | 55.04 |
| KXG24662 | Sorghum | nucleus | 60.83 | 54.82 |
| Zm00001d026346_P002 | Maize | extracellular | 56.93 | 54.67 |
| Zm00001d002244_P003 | Maize | nucleus | 59.12 | 54.24 |
| Solyc01g108500.2.1 | Tomato | nucleus | 51.82 | 51.57 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 60.83 | 49.31 |
| Solyc10g050860.1.1 | Tomato | nucleus | 51.09 | 49.07 |
| HORVU2Hr1G106810.1 | Barley | nucleus | 54.01 | 48.05 |
| Solyc11g065880.1.1 | Tomato | nucleus | 48.66 | 47.96 |
| HORVU7Hr1G066510.3 | Barley | plastid | 50.61 | 47.6 |
| Solyc04g079310.2.1 | Tomato | nucleus | 50.37 | 45.9 |
| Solyc07g042180.2.1 | Tomato | nucleus | 25.55 | 26.38 |
| Solyc12g009230.1.1 | Tomato | mitochondrion, nucleus | 25.3 | 25.94 |
| Solyc06g063000.2.1 | Tomato | nucleus | 25.55 | 25.18 |
| Solyc03g122180.2.1 | Tomato | nucleus | 24.57 | 24.22 |
| Solyc03g118800.2.1 | Tomato | nucleus | 15.09 | 17.03 |
| Solyc01g107870.2.1 | Tomato | extracellular | 24.33 | 15.55 |
| Solyc12g088720.1.1 | Tomato | plastid | 23.6 | 14.56 |
| Solyc09g008620.1.1 | Tomato | cytosol | 20.68 | 14.05 |
| Solyc10g085750.1.1 | Tomato | nucleus | 20.92 | 13.83 |
| Solyc06g062680.1.1 | Tomato | cytosol | 12.9 | 9.98 |
| VIT_18s0001g10190.t01 | Wine grape | cytosol, mitochondrion | 1.95 | 6.4 |
Protein Annotations
| EnsemblPlants:Solyc10g005260.2.1 | EnsemblPlantsGene:Solyc10g005260.2 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR43955 | PANTHER:PTHR43955:SF2 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000276C55B | UniProt:K4CX59 | MapMan:16.9.4 | : | : |
Description
No Description!
Coordinates
chr10:-:203437..211345
Molecular Weight (calculated)
45733.9 Da
IEP (calculated)
5.389
GRAVY (calculated)
-0.829
Length
411 amino acids
Sequence
(BLAST)
(BLAST)
001: MQPAASSMVP PPMAAQPQYQ QQWMAQQPQY QVLPPQAGYY YQPPPQQGGG VPPPQQQQQQ SQYTASAQPT SADEVRTLWI GDLQFWMDEQ YLYSCFAQTG
101: EVVSAKVIRN KQTQQSEGYG FIEFNSHAAA ERNLQAYNGT LMPNIEQNFR LNWASLGSGE KRSDNTPEYT IFVGDLAADV TDYMLQETFR PNYPSIKGAK
201: VVTDRATGHT KGYGFVRFGD ESEQLRAMTE MNGKFCSTRP MRIGPAANKK NSGGQMQASY QSTGTQNEDD PTNTTIFVGN LDASVTDDHL RQVFGNYGQL
301: LHVKIPLGKR CGFVQFTDRS CAEEALNALS GTQLGGQTIR LSWGRSPSNK QQSQGDPNQW SGGYYGYTPG YDAYGYAQPT QDPNMYYAGY AGYGNYAQPP
401: HQQQQMPQQP Q
101: EVVSAKVIRN KQTQQSEGYG FIEFNSHAAA ERNLQAYNGT LMPNIEQNFR LNWASLGSGE KRSDNTPEYT IFVGDLAADV TDYMLQETFR PNYPSIKGAK
201: VVTDRATGHT KGYGFVRFGD ESEQLRAMTE MNGKFCSTRP MRIGPAANKK NSGGQMQASY QSTGTQNEDD PTNTTIFVGN LDASVTDDHL RQVFGNYGQL
301: LHVKIPLGKR CGFVQFTDRS CAEEALNALS GTQLGGQTIR LSWGRSPSNK QQSQGDPNQW SGGYYGYTPG YDAYGYAQPT QDPNMYYAGY AGYGNYAQPP
401: HQQQQMPQQP Q
001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEKSCAE EALRMLNGVQ LGGTTVRLSW GRSPSNKQSG DPSQFYYGGY GQGQEQYGYT MPQDPNAYYG GYSGGGYSGG YQQTPQAGQQ PPQQPPQQQQ
401: VGFSY
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEKSCAE EALRMLNGVQ LGGTTVRLSW GRSPSNKQSG DPSQFYYGGY GQGQEQYGYT MPQDPNAYYG GYSGGGYSGG YQQTPQAGQQ PPQQPPQQQQ
401: VGFSY
Arabidopsis Description
RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.