Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G495700.1 | Wheat | nucleus | 99.54 | 99.54 |
| TraesCS2D01G472700.1 | Wheat | nucleus | 99.54 | 99.54 |
| Os04t0625800-01 | Rice | nucleus | 83.94 | 86.12 |
| KXG27152 | Sorghum | nucleus | 82.34 | 82.72 |
| Zm00001d026346_P002 | Maize | extracellular | 80.96 | 82.48 |
| Zm00001d002244_P003 | Maize | nucleus | 82.57 | 80.36 |
| TraesCS7A01G295700.3 | Wheat | plastid | 56.42 | 79.1 |
| TraesCS6A01G100800.1 | Wheat | nucleus | 70.87 | 75.37 |
| HORVU2Hr1G106810.1 | Barley | nucleus | 78.9 | 74.46 |
| KRH20867 | Soybean | nucleus | 60.55 | 64.55 |
| KRH11417 | Soybean | nucleus | 59.4 | 63.02 |
| KRH51075 | Soybean | endoplasmic reticulum | 56.88 | 62.47 |
| KRH02082 | Soybean | nucleus | 57.34 | 62.19 |
| Solyc03g031720.2.1 | Tomato | nucleus | 55.28 | 59.51 |
| PGSC0003DMT400013036 | Potato | nucleus | 53.9 | 58.75 |
| Solyc10g005260.2.1 | Tomato | nucleus | 55.28 | 58.64 |
| PGSC0003DMT400029379 | Potato | nucleus | 53.67 | 58.5 |
| AT1G11650.2 | Thale cress | nucleus | 54.13 | 58.27 |
| CDY34835 | Canola | nucleus | 52.06 | 57.76 |
| Bra031774.1-P | Field mustard | nucleus | 51.61 | 57.11 |
| Solyc02g080420.2.1 | Tomato | extracellular, nucleus, plastid | 53.67 | 56.66 |
| PGSC0003DMT400042504 | Potato | nucleus | 52.75 | 55.69 |
| TraesCS5A01G243500.1 | Wheat | nucleus | 43.35 | 55.26 |
| TraesCS2A01G221900.2 | Wheat | nucleus | 55.05 | 51.72 |
| TraesCS6A01G204400.1 | Wheat | mitochondrion | 43.35 | 49.87 |
| TraesCS4A01G014200.1 | Wheat | nucleus | 47.48 | 49.76 |
| TraesCS2A01G317700.2 | Wheat | plastid | 45.87 | 47.17 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 51.83 | 44.58 |
| TraesCS2A01G256500.1 | Wheat | nucleus | 33.72 | 41.29 |
| TraesCS2A01G169100.1 | Wheat | nucleus | 24.31 | 24.77 |
| TraesCS7A01G252200.1 | Wheat | mitochondrion, nucleus | 24.77 | 24.16 |
| TraesCS4A01G150000.1 | Wheat | mitochondrion | 22.02 | 21.43 |
| TraesCS1A01G143500.1 | Wheat | nucleus | 13.53 | 16.03 |
| TraesCS7A01G288700.1 | Wheat | nucleus | 22.48 | 14.8 |
| TraesCS5A01G161800.2 | Wheat | nucleus | 21.33 | 14.29 |
| TraesCS2A01G359000.1 | Wheat | cytosol | 21.33 | 13.98 |
| TraesCS3A01G076800.1 | Wheat | mitochondrion, nucleus, plasma membrane, plastid | 17.66 | 13.8 |
| TraesCS4A01G099500.1 | Wheat | cytosol | 19.5 | 13.04 |
| VIT_18s0001g10190.t01 | Wine grape | cytosol, mitochondrion | 1.38 | 4.8 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G473000.1 | EnsemblPlantsGene:TraesCS2A01G473000 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR43955 |
| PANTHER:PTHR43955:SF3 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| TIGR:cd12344 | TIGR:cd12345 | TIGR:cd12346 | MapMan:16.9.4 | : | : |
Description
No Description!
Coordinates
chr2A:+:714328380..714331445
Molecular Weight (calculated)
47222.4 Da
IEP (calculated)
6.042
GRAVY (calculated)
-0.657
Length
436 amino acids
Sequence
(BLAST)
(BLAST)
001: MMQPPPPSQP QPGMGAPMPP QGAGGQPPHW GAIPPPMPHY AQPPPQQQPP PQAMWGQPPP QAAPYGQVPA PQQYYAAPQA PAAPAASDEV RTLWIGDLQY
101: WMDENYIYSC FANTGEFQSV KLIRDKQTGQ LQGYGFVEFA SHAGAERVLQ TFNGQMMPNV ELAYRLNWAS AGEKRDDTPD YTIFVGDLAA DVTDYMLQET
201: FRVHYPSVKG AKVVTDKMTM RSKGYGFVKF GDPTEQARAM TEMNGMPCSS RPMRIGPAAN RKTTGVQERV PIPNTNTQGA QSDNDPNNTT IFVGGLDPNV
301: TEDALKQVFA PYGEVVHVKI PVGKRCGFVQ YANRPSAEQA LQLLQGTLVG GQNVRLSWGR SPSNKQTQPQ EASQWGAGAA AGAAGGYYAG YGQGYEAYGQ
401: GYAQPQDPNM YGYGAYAGYP NYQQPAAAPQ PPPPQQ
101: WMDENYIYSC FANTGEFQSV KLIRDKQTGQ LQGYGFVEFA SHAGAERVLQ TFNGQMMPNV ELAYRLNWAS AGEKRDDTPD YTIFVGDLAA DVTDYMLQET
201: FRVHYPSVKG AKVVTDKMTM RSKGYGFVKF GDPTEQARAM TEMNGMPCSS RPMRIGPAAN RKTTGVQERV PIPNTNTQGA QSDNDPNNTT IFVGGLDPNV
301: TEDALKQVFA PYGEVVHVKI PVGKRCGFVQ YANRPSAEQA LQLLQGTLVG GQNVRLSWGR SPSNKQTQPQ EASQWGAGAA AGAAGGYYAG YGQGYEAYGQ
401: GYAQPQDPNM YGYGAYAGYP NYQQPAAAPQ PPPPQQ
001: MQQPPSNAAG AGQIPSGQQH LWMMMQQQQQ QQQMQLSAAP LGQHQYGIGS QNPGSASDVK SLWIGDLQQW MDENYIMSVF AQSGEATSAK VIRNKLTGQS
101: EGYGFIEFVS HSVAERVLQT YNGAPMPSTE QTFRLNWAQA GAGEKRFQTE GPDHTIFVGD LAPEVTDYML SDTFKNVYGS VKGAKVVLDR TTGRSKGYGF
201: VRFADENEQM RAMTEMNGQY CSTRPMRIGP AANKNALPMQ PAMYQNTQGA NAGDNDPNNT TIFVGGLDAN VTDDELKSIF GQFGELLHVK IPPGKRCGFV
301: QYANKASAEH ALSVLNGTQL GGQSIRLSWG RSPNKQSDQA QWNGGGYYGY PPQPQGGYGY AAQPPTQDPN AYYGGYTGYG NYQQQRQ
101: EGYGFIEFVS HSVAERVLQT YNGAPMPSTE QTFRLNWAQA GAGEKRFQTE GPDHTIFVGD LAPEVTDYML SDTFKNVYGS VKGAKVVLDR TTGRSKGYGF
201: VRFADENEQM RAMTEMNGQY CSTRPMRIGP AANKNALPMQ PAMYQNTQGA NAGDNDPNNT TIFVGGLDAN VTDDELKSIF GQFGELLHVK IPPGKRCGFV
301: QYANKASAEH ALSVLNGTQL GGQSIRLSWG RSPNKQSDQA QWNGGGYYGY PPQPQGGYGY AAQPPTQDPN AYYGGYTGYG NYQQQRQ
Arabidopsis Description
RBP45APolyadenylate-binding protein RBP45A [Source:UniProtKB/Swiss-Prot;Acc:Q9FPJ8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.