Factsheet for Solyc03g031720.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013036	Potato	nucleus	95.8	97.0
Solyc10g005260.2.1	Tomato	nucleus	81.98	80.78
Solyc02g080420.2.1	Tomato	extracellular, nucleus, plastid	81.98	80.39
KRH51075	Soybean	endoplasmic reticulum	64.94	66.25
KRH20867	Soybean	nucleus	65.43	64.79
KRH02082	Soybean	nucleus	64.2	64.68
KRH11417	Soybean	nucleus	64.44	63.5
Solyc07g064510.2.1	Tomato	plastid	63.46	62.68
CDY34835	Canola	nucleus	59.75	61.58
Bra031774.1-P	Field mustard	nucleus	58.52	60.15
AT1G11650.2	Thale cress	nucleus	60.0	60.0
TraesCS7A01G295700.3	Wheat	plastid	44.94	58.52
Os04t0625800-01	Rice	nucleus	60.74	57.88
TraesCS6D01G081700.2	Wheat	plastid	57.04	56.34
TraesCS6A01G100800.1	Wheat	nucleus	57.04	56.34
Os08t0190200-00	Rice	nucleus	61.48	56.33
TraesCS6B01G128900.2	Wheat	plastid	57.78	56.12
KXG27152	Sorghum	nucleus	59.75	55.76
TraesCS2D01G472700.1	Wheat	nucleus	59.75	55.5
TraesCS2B01G495700.1	Wheat	nucleus	59.51	55.28
TraesCS2A01G473000.1	Wheat	nucleus	59.51	55.28
TraesCS7B01G199000.1	Wheat	nucleus, plastid	57.28	55.11
Zm00001d026346_P002	Maize	extracellular	58.02	54.91
Zm00001d049416_P001	Maize	extracellular, nucleus	61.73	54.82
KXG24662	Sorghum	nucleus	61.48	54.61
Zm00001d002244_P003	Maize	nucleus	60.25	54.46
Solyc01g108500.2.1	Tomato	nucleus	51.85	50.85
Solyc11g065880.1.1	Tomato	nucleus	50.12	48.68
Solyc10g050860.1.1	Tomato	nucleus	51.36	48.6
HORVU2Hr1G106810.1	Barley	nucleus	55.06	48.27
HORVU7Hr1G066510.3	Barley	plastid	51.6	47.83
CDY34639	Canola	nucleus, plastid, vacuole	59.75	47.73
Solyc04g079310.2.1	Tomato	nucleus	50.86	45.68
Solyc07g042180.2.1	Tomato	nucleus	25.68	26.13
Solyc12g009230.1.1	Tomato	mitochondrion, nucleus	25.43	25.69
Solyc06g063000.2.1	Tomato	nucleus	26.42	25.66
Solyc03g122180.2.1	Tomato	nucleus	25.68	24.94
Solyc03g118800.2.1	Tomato	nucleus	14.81	16.48
Solyc01g107870.2.1	Tomato	extracellular	24.2	15.24
Solyc12g088720.1.1	Tomato	plastid	23.21	14.11
Solyc09g008620.1.1	Tomato	cytosol	20.74	13.88
Solyc10g085750.1.1	Tomato	nucleus	20.74	13.5
Solyc06g062680.1.1	Tomato	cytosol	11.11	8.47
VIT_18s0001g10190.t01	Wine grape	cytosol, mitochondrion	1.98	6.4

Protein Annotations

EnsemblPlants:Solyc03g031720.2.1	EnsemblPlantsGene:Solyc03g031720.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR43955	PANTHER:PTHR43955:SF2	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0002769291	UniProt:K4BFE4	MapMan:16.9.4	:	:

Description

No Description!

Coordinates

chr3:-:4173250..4179265

Molecular Weight (calculated)

44801.7 Da

IEP (calculated)

5.966

GRAVY (calculated)

-0.758

Length

405 amino acids

Sequence
(BLAST)

001: MQPANSMVPQ PMAAPSQQQY QQQPQQHWMA QQQPAAYQVP QQQSAYYYQQ QQQPQYNAAA AAAQPTSSDE IRSLWIGDLQ FWMDEQYIQN CFAHTGEVAS
101: VKVIRNKQSG QSEGYGFVEF ISHAAAERNL QTYNGSMMPN SEQPFRLNWA SLGSGEKRSD NGPEYTIFVG DLAADVTDYM LQETFRANYP SVKGAKVVTD
201: RVTGRTKGYG FVKFADESEQ LHAMTEMNGK FCSTRPMRIG PAANKKSVPG QVQASYQSTN GTQNEDDPSN TTIFVGNLDA NVTDDHLRQV FGNYGQLLHV
301: KIPVGKRCGF VQFADRSCAE EALRALSGTQ LGGQTIRLSW GRSPSNKQQP QADPNQYGGY YGYSAGYDAA AAAAYGYAQP AQDPNLYYGG YAGYGNYPPQ
401: QQQPQ

Best Arabidopsis Sequence Match ( AT1G11650.2 )
(BLAST)

001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEKSCAE EALRMLNGVQ LGGTTVRLSW GRSPSNKQSG DPSQFYYGGY GQGQEQYGYT MPQDPNAYYG GYSGGGYSGG YQQTPQAGQQ PPQQPPQQQQ
401: VGFSY

Arabidopsis Description

RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.