Factsheet for TraesCS2B01G495700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G472700.1	Wheat	nucleus	99.54	99.54
TraesCS2A01G473000.1	Wheat	nucleus	99.54	99.54
Os04t0625800-01	Rice	nucleus	83.94	86.12
KXG27152	Sorghum	nucleus	82.34	82.72
Zm00001d026346_P002	Maize	extracellular	80.96	82.48
Zm00001d002244_P003	Maize	nucleus	82.57	80.36
HORVU2Hr1G106810.1	Barley	nucleus	78.9	74.46
TraesCS6B01G128900.2	Wheat	plastid	70.87	74.1
TraesCS7B01G199000.1	Wheat	nucleus, plastid	70.64	73.16
KRH20867	Soybean	nucleus	60.09	64.06
KRH11417	Soybean	nucleus	58.95	62.53
KRH51075	Soybean	endoplasmic reticulum	56.42	61.96
KRH02082	Soybean	nucleus	56.88	61.69
Solyc03g031720.2.1	Tomato	nucleus	55.28	59.51
Solyc10g005260.2.1	Tomato	nucleus	55.5	58.88
PGSC0003DMT400013036	Potato	nucleus	53.9	58.75
PGSC0003DMT400029379	Potato	nucleus	53.9	58.75
AT1G11650.2	Thale cress	nucleus	54.13	58.27
CDY34835	Canola	nucleus	52.06	57.76
Bra031774.1-P	Field mustard	nucleus	51.61	57.11
Solyc02g080420.2.1	Tomato	extracellular, nucleus, plastid	53.9	56.9
PGSC0003DMT400042504	Potato	nucleus	52.98	55.93
TraesCS5B01G241400.1	Wheat	nucleus	43.58	55.56
TraesCS2B01G247400.4	Wheat	nucleus	55.05	51.72
TraesCS2B01G335700.1	Wheat	plastid	45.18	46.9
TraesCS4B01G289600.1	Wheat	nucleus	49.31	46.84
CDY34639	Canola	nucleus, plastid, vacuole	51.83	44.58
TraesCS6B01G228100.1	Wheat	endoplasmic reticulum, plastid, vacuole	45.18	43.2
TraesCS2B01G195400.1	Wheat	nucleus	24.08	24.48
TraesCS7B01G138700.1	Wheat	mitochondrion, nucleus	24.54	23.94
TraesCS4B01G148600.1	Wheat	nucleus	21.79	21.35
TraesCS1B01G160900.1	Wheat	nucleus	13.53	16.03
TraesCS5B01G159400.1	Wheat	cytosol	21.33	14.29
TraesCS7B01G182800.3	Wheat	cytosol	22.02	14.22
TraesCS2B01G378400.1	Wheat	nucleus	21.56	14.14
TraesCS4B01G204800.1	Wheat	cytosol	19.72	13.21
TraesCS3B01G090800.1	Wheat	mitochondrion	17.43	12.16
TraesCS2B01G601400.1	Wheat	nucleus	21.56	9.81
TraesCS2B01G599000.1	Wheat	nucleus	21.1	9.46
TraesCS2B01G598800.1	Wheat	nucleus	21.79	9.07
VIT_18s0001g10190.t01	Wine grape	cytosol, mitochondrion	1.38	4.8

Protein Annotations

EnsemblPlants:TraesCS2B01G495700.1	EnsemblPlantsGene:TraesCS2B01G495700	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom	PANTHER:PTHR43955
PANTHER:PTHR43955:SF3	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928
TIGR:cd12344	TIGR:cd12345	TIGR:cd12346	MapMan:16.9.4	:	:

Description

No Description!

Coordinates

chr2B:+:692460165..692463434

Molecular Weight (calculated)

47222.4 Da

IEP (calculated)

6.042

GRAVY (calculated)

-0.652

Length

436 amino acids

Sequence
(BLAST)

001: MMQPPPPSQP QPGMGAPMPP QGAGGQPPHW GAIPPPMPHY AQPPPQQQPP PQAMWGQPPP QAAPYGQVPA PQQYYAAPQA PAAPAASDEV RTLWIGDLQY
101: WMDENYIYSC FANTGEFQSV KLIRDKQTGQ LQGYGFVEFA SHAAAERVLQ SFNGQMMPNV ELAYRLNWAS AGEKRDDTPD YTIFVGDLAA DVTDYMLQET
201: FRVHYPSVKG AKVVTDKMTM RSKGYGFVKF GDPTEQARAM TEMNGMPCSS RPMRIGPAAN RKTTGVQERV PIPNTNTQGA QSDNDPNNTT IFVGGLDPNV
301: TEDALKQVFA PYGEVVHVKI PVGKRCGFVQ YANRPSAEQA LQLLQGTLVG GQNVRLSWGR SPSNKQTQPQ EASQWGAGAA AGAAGGYYAG YGQGYEAYGQ
401: GYAQPQDPNM YGYGAYAGYP NYQQPAAAPQ PPPPQQ

Best Arabidopsis Sequence Match ( AT5G54900.1 )
(BLAST)

001: MQQPPSNAAG AGQIPSGQQH LWMMMQQQQQ QQQMQLSAAP LGQHQYGIGS QNPGSASDVK SLWIGDLQQW MDENYIMSVF AQSGEATSAK VIRNKLTGQS
101: EGYGFIEFVS HSVAERVLQT YNGAPMPSTE QTFRLNWAQA GAGEKRFQTE GPDHTIFVGD LAPEVTDYML SDTFKNVYGS VKGAKVVLDR TTGRSKGYGF
201: VRFADENEQM RAMTEMNGQY CSTRPMRIGP AANKNALPMQ PAMYQNTQGA NAGDNDPNNT TIFVGGLDAN VTDDELKSIF GQFGELLHVK IPPGKRCGFV
301: QYANKASAEH ALSVLNGTQL GGQSIRLSWG RSPNKQSDQA QWNGGGYYGY PPQPQGGYGY AAQPPTQDPN AYYGGYTGYG NYQQQRQ

Arabidopsis Description

RBP45APolyadenylate-binding protein RBP45A [Source:UniProtKB/Swiss-Prot;Acc:Q9FPJ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.