Factsheet for TraesCS4B01G204800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G205700.1	Wheat	cytosol	97.7	97.4
TraesCS4A01G099500.1	Wheat	cytosol	95.39	95.25
HORVU4Hr1G059070.1	Barley	cytosol	95.55	95.11
Os03t0278500-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	76.34	76.82
KXG40160	Sorghum	nucleus	69.89	63.11
Zm00001d047790_P001	Maize	plastid	69.12	61.22
VIT_08s0007g04380.t01	Wine grape	cytosol	46.39	47.63
KRH32613	Soybean	cytosol	35.33	47.03
KRH19986	Soybean	cytosol	35.48	46.67
KRG96088	Soybean	cytosol	44.85	45.91
KRH67800	Soybean	cytosol	44.55	45.89
Solyc10g085750.1.1	Tomato	nucleus	43.47	45.5
PGSC0003DMT400021673	Potato	cytosol	43.47	45.06
GSMUA_Achr9P10860_001	Banana	cytosol	46.54	42.38
PGSC0003DMT400033802	Potato	cytosol	39.17	41.94
Solyc09g008620.1.1	Tomato	cytosol	38.71	41.65
CDY72408	Canola	plastid	5.84	40.86
AT2G36660.1	Thale cress	cytosol, plastid	37.48	40.07
Bra034301.1-P	Field mustard	mitochondrion	6.76	39.64
TraesCS5B01G159400.1	Wheat	cytosol	38.71	38.71
TraesCS2B01G378400.1	Wheat	nucleus	37.02	36.24
CDY33264	Canola	mitochondrion, nucleus	10.75	35.0
CDY57754	Canola	nucleus	11.21	34.27
TraesCS7B01G182800.3	Wheat	cytosol	35.48	34.22
CDY56198	Canola	cytosol	24.58	32.72
CDY30168	Canola	cytosol	26.88	32.53
TraesCS3B01G090800.1	Wheat	mitochondrion	30.72	32.0
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	25.04	31.23
TraesCS5B01G241400.1	Wheat	nucleus	12.75	24.27
TraesCS1B01G160900.1	Wheat	nucleus	13.52	23.91
TraesCS6B01G128900.2	Wheat	plastid	13.21	20.62
TraesCS2B01G195400.1	Wheat	nucleus	13.52	20.51
TraesCS2B01G335700.1	Wheat	plastid	13.06	20.24
TraesCS7B01G199000.1	Wheat	nucleus, plastid	13.06	20.19
TraesCS4B01G289600.1	Wheat	nucleus	13.98	19.83
TraesCS2B01G495700.1	Wheat	nucleus	13.21	19.72
TraesCS4B01G148600.1	Wheat	nucleus	12.44	18.2
TraesCS7B01G138700.1	Wheat	mitochondrion, nucleus	12.29	17.9
TraesCS6B01G228100.1	Wheat	endoplasmic reticulum, plastid, vacuole	12.44	17.76
TraesCS2B01G247400.4	Wheat	nucleus	11.98	16.81
TraesCS2B01G601400.1	Wheat	nucleus	14.44	9.81
TraesCS2B01G599000.1	Wheat	nucleus	14.13	9.46
TraesCS2B01G598800.1	Wheat	nucleus	13.98	8.69

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	PFscan:PS50102
PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF455	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk
SMART:SM00360	SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628
EnsemblPlantsGene:TraesCS4B01G204800	EnsemblPlants:TraesCS4B01G204800.1	TIGR:cd12378	TIGR:cd12381	SEG:seg	:

Description

No Description!

Coordinates

chr4B:-:436886848..436891455

Molecular Weight (calculated)

72348.7 Da

IEP (calculated)

7.985

GRAVY (calculated)

-0.484

Length

651 amino acids

Sequence
(BLAST)

001: MATAPEAVEV PTTEETPAPA ASEDQAAPAA AAAGTNATVP ALYVGDLHEN AQEEHIFDAF SKVGAVTSVR VCRDNATSRS LRYGYVNYFS QADATTALEQ
101: MNHSLILDKP IRVMWSNRDP DARRSGVGNV FVKNFGEHVD NVILQELFSK FGEILSCKVV RNEDGTSRGY GFVQFASQEP ADIAIETLNN SYFEGRELLV
201: AHFVKKSERS TNNDDKYTNL YMKNIDNDMT EELIKLKFSQ HGQVTSVKIM KRNDGTSKGF GFVSFKNPES AKKAKEAMNG MALGAKTLYV ARAQKKAERK
301: QYLQLLHEEK RNEIITKSNG SNVYIKNISD EVDDDTLRKR FVEFGNITSV KIMRDDKGIS KGFGFVCYST PDEAKCAVSS MRGVMFYGKP LYVAIAQRKE
401: DRKARLEQRF AELATMAGTA SPVIPTGYPH VYFAHPSTHF PQGPSRQGFM YPPIGLGQEW RQNVYPSLHS IQQIHQPLMP NTPRQYRNNR GRMTGNMMTF
501: PHAVNYVSHA QTAKDFMSMS RQQFGHAKYI TPDVMSNGLA IHHGGPISSV NDSFASLLAA APPDQQRDML GNRIYPLVER YHPDLASKIT GMLLELDTSY
601: LLSMLNSQDT LSAKVNECVQ ALQGQQAAKN KPEDLEALHP GFLDSTGVNA N

Best Arabidopsis Sequence Match ( AT2G36660.1 )
(BLAST)

001: MATVHAALHA ADASSSGSSS PVTASLYVGD LHPSVTEGIL YDAFAEFKSL TSVRLCKDAS SGRSLCYGYA NFLSRQDANL AIEKKNNSLL NGKMIRVMWS
101: VRAPDARRNG VGNVFVKNLP ESVTNAVLQD MFKKFGNIVS CKVATLEDGK SRGYGFVQFE QEDAAHAAIQ TLNSTIVADK EIYVGKFMKK TDRVKPEEKY
201: TNLYMKNLDA DVSEDLLREK FAEFGKIVSL AIAKDENRLC RGYAFVNFDN PEDARRAAET VNGTKFGSKC LYVGRAQKKA EREQLLREQF KEKHEEQKMI
301: AKVSNIYVKN VNVAVTEEEL RKHFSQCGTI TSTKLMCDEK GKSKGFGFVC FSTPEEAIDA VKTFHGQMFH GKPLYVAIAQ KKEDRKMQLQ VQFGNRVEAR
401: KSSSSASVNP GTYAPLYYTN THPGMVYQSY PLMWKSANMI GSSYPNSEAV TYPPMVANAP SKNRQNRIGK LDRNAVSYVP NVYQSTQMLP LSRDFSKQQH
501: SRTYGRGKEM KKSIQQRQSE TVGMEMQLLG ELLHPLVEKL EPQLANKITG MLLEMDKSEL LLLLKSPEDL AVRVDEAFEV LKSSKTNLTA PNTHRSDYLA
601: SGIAGVSIK

Arabidopsis Description

PAB7Polyadenylate-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQA8]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.