Factsheet for TraesCS4D01G205700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G204800.1	Wheat	cytosol	97.4	97.7
TraesCS4A01G099500.1	Wheat	cytosol	96.17	96.32
HORVU4Hr1G059070.1	Barley	cytosol	96.32	96.18
Os03t0278500-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	76.88	77.59
KXG40160	Sorghum	nucleus	70.14	63.52
Zm00001d047790_P001	Maize	plastid	69.07	61.36
VIT_08s0007g04380.t01	Wine grape	cytosol	46.55	47.95
KRH32613	Soybean	cytosol	35.38	47.24
KRH19986	Soybean	cytosol	35.68	47.07
Solyc10g085750.1.1	Tomato	nucleus	43.49	45.66
KRG96088	Soybean	cytosol	44.41	45.6
KRH67800	Soybean	cytosol	44.1	45.57
PGSC0003DMT400021673	Potato	cytosol	43.49	45.22
CDY72408	Canola	plastid	6.13	43.01
GSMUA_Achr9P10860_001	Banana	cytosol	46.71	42.66
PGSC0003DMT400033802	Potato	cytosol	39.36	42.27
Solyc09g008620.1.1	Tomato	cytosol	38.9	41.98
Bra034301.1-P	Field mustard	mitochondrion	6.89	40.54
AT2G36660.1	Thale cress	cytosol, plastid	36.75	39.41
TraesCS3D01G076800.1	Wheat	mitochondrion	15.01	39.36
TraesCS5D01G167000.1	Wheat	nucleus, unclear	38.9	39.02
TraesCS7D01G287900.1	Wheat	cytosol	36.29	37.15
TraesCS3D01G076700.1	Wheat	mitochondrion	25.27	37.08
TraesCS2D01G358000.1	Wheat	cytosol	37.21	36.6
CDY33264	Canola	mitochondrion, nucleus	11.18	36.5
CDY57754	Canola	nucleus	11.64	35.68
CDY30168	Canola	cytosol	27.41	33.27
CDY56198	Canola	cytosol	24.81	33.13
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	25.27	31.61
TraesCS5D01G250100.1	Wheat	nucleus	12.56	23.98
TraesCS1D01G142300.1	Wheat	nucleus	13.17	23.37
TraesCS6D01G081700.2	Wheat	plastid	13.17	20.98
TraesCS2D01G176700.1	Wheat	nucleus	13.32	20.42
TraesCS2D01G315400.2	Wheat	plastid	13.17	20.28
TraesCS2D01G472700.1	Wheat	nucleus	13.32	19.95
TraesCS2D01G266400.1	Wheat	nucleus	10.87	19.94
TraesCS4D01G288600.1	Wheat	nucleus	13.63	19.47
TraesCS6D01G184600.1	Wheat	cytosol, nucleus, plastid	12.1	18.94
TraesCS7D01G250300.1	Wheat	mitochondrion, nucleus	12.4	18.12
TraesCS4D01G150600.2	Wheat	nucleus	12.1	17.59
TraesCS2D01G227900.5	Wheat	nucleus	12.1	17.03
TraesCS2D01G593700.1	Wheat	nucleus	14.85	10.0
TraesCS2D01G594800.1	Wheat	nucleus	14.24	9.73
TraesCS2D01G593900.1	Wheat	nucleus	14.09	8.98

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	PFscan:PS50102
PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF455	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk
SMART:SM00360	SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628
EnsemblPlantsGene:TraesCS4D01G205700	EnsemblPlants:TraesCS4D01G205700.1	TIGR:cd12378	TIGR:cd12379	TIGR:cd12380	TIGR:cd12381
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4D:-:353419968..353424462

Molecular Weight (calculated)

72325.6 Da

IEP (calculated)

7.048

GRAVY (calculated)

-0.469

Length

653 amino acids

Sequence
(BLAST)

001: MAAAPEPVEV PTTEEAPAPA PAASEDQAAP AAAAAGTNAT VPALYVGDLH ENAQEEHIFD AFSKVGAVTS VRVCRDNATS RSLRYGYVNY FSQADATTAL
101: EQMNHSLILD KPIRVMWSNR DPDARRSGVG NVFVKNFGDH IDNVILQELF SKFGEILSCK VVRNEDGTSR GYGFVQFAAQ EPADIAIETL NNSYFEGREL
201: LVAHFIKKSE RSANNDDKYT NLYMKNIDDD MTEELIKLKF SQHGQVTSVK IMKRDDGTSK GFGFVSFKNP ESAKKAKEAM NGMALGAKTL YVARAQKKAE
301: RKQYLQLLHE EKRNEIITKS NGSNVYIKNI SDEVDDDTLR ERFAEFGNIT SVKIMRDDKG ISKGFGFVCY STPDEAKCAV SSMRGVMFYG KPLYVAIAQR
401: KEDRKARLEQ RFAELATMAG TASPVIPTGY PHVYFAHPST HFPQGPSRQG FMYPPIGLGQ EWRQNVYPSP HSIQQIHPPL MPNTPRQYRN NRGCMTGNMM
501: TFPHAVNYVS HAQTAKDFMS MSRQQFGHAK YITPDVMSNG LAIHHGGPIS SVNDSFASLL AAAPPDQQRD MLGNRIYPLV ERYHPDLASK ITGMLLELDT
601: SYLLSMLNSQ DTLSAKVNEC VQALQGQQAA KNKPEDLEAL HPGFLDSTGV NAN

Best Arabidopsis Sequence Match ( AT2G36660.1 )
(BLAST)

001: MATVHAALHA ADASSSGSSS PVTASLYVGD LHPSVTEGIL YDAFAEFKSL TSVRLCKDAS SGRSLCYGYA NFLSRQDANL AIEKKNNSLL NGKMIRVMWS
101: VRAPDARRNG VGNVFVKNLP ESVTNAVLQD MFKKFGNIVS CKVATLEDGK SRGYGFVQFE QEDAAHAAIQ TLNSTIVADK EIYVGKFMKK TDRVKPEEKY
201: TNLYMKNLDA DVSEDLLREK FAEFGKIVSL AIAKDENRLC RGYAFVNFDN PEDARRAAET VNGTKFGSKC LYVGRAQKKA EREQLLREQF KEKHEEQKMI
301: AKVSNIYVKN VNVAVTEEEL RKHFSQCGTI TSTKLMCDEK GKSKGFGFVC FSTPEEAIDA VKTFHGQMFH GKPLYVAIAQ KKEDRKMQLQ VQFGNRVEAR
401: KSSSSASVNP GTYAPLYYTN THPGMVYQSY PLMWKSANMI GSSYPNSEAV TYPPMVANAP SKNRQNRIGK LDRNAVSYVP NVYQSTQMLP LSRDFSKQQH
501: SRTYGRGKEM KKSIQQRQSE TVGMEMQLLG ELLHPLVEKL EPQLANKITG MLLEMDKSEL LLLLKSPEDL AVRVDEAFEV LKSSKTNLTA PNTHRSDYLA
601: SGIAGVSIK

Arabidopsis Description

PAB7Polyadenylate-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQA8]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.