Factsheet for TraesCS4D01G150600.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
nucleus 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G459300.1
TraesCS2A01G459400.1
TraesCS2A01G459500.1
TraesCS2B01G480800.1
TraesCS2B01G480900.1
TraesCS2B01G481200.1
TraesCS2B01G481300.1
TraesCS2D01G459600.1
TraesCS2D01G459700.1
TraesCS2D01G459800.1
TraesCS4A01G296700.1
TraesCS4B01G017000.1
TraesCS4D01G015300.1
TraesCS6A01G306500.1
TraesCS6B01G334900.1
TraesCS6D01G285600.1
TraesCS7B01G091900.1
TraesCS7D01G187600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14100.1	TraesCS2A01G459300.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2A01G459400.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2A01G459500.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2B01G480800.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2B01G480900.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2B01G481200.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2B01G481300.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2D01G459600.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2D01G459700.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS2D01G459800.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS4A01G296700.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS4B01G017000.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS4D01G015300.1	AT1G16500.1	21798944
AT3G14100.1	TraesCS6A01G306500.1	AT3G47620.1	21798944
AT3G14100.1	TraesCS6B01G334900.1	AT3G47620.1	21798944
AT3G14100.1	TraesCS6D01G285600.1	AT3G47620.1	21798944
AT3G14100.1	TraesCS7B01G091900.1	AT3G47620.1	21798944
AT3G14100.1	TraesCS7D01G187600.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G148600.1	Wheat	nucleus	96.44	97.3
TraesCS4A01G150000.1	Wheat	mitochondrion	95.55	95.76
HORVU4Hr1G033990.7	Barley	golgi, nucleus	83.96	85.88
Os11t0620100-01	Rice	nucleus	84.19	85.71
Zm00001d048824_P004	Maize	nucleus	81.96	82.33
Zm00001d026528_P001	Maize	plastid	40.31	82.27
EES08860	Sorghum	nucleus	79.29	80.73
GSMUA_Achr6P11660_001	Banana	mitochondrion	70.16	74.47
PGSC0003DMT400012431	Potato	mitochondrion, nucleus	68.6	73.86
VIT_09s0002g00880.t01	Wine grape	mitochondrion, nucleus	68.82	73.57
KRH06218	Soybean	nucleus	67.93	73.32
GSMUA_Achr10P...	Banana	mitochondrion	69.27	73.18
Solyc06g063000.2.1	Tomato	nucleus	67.93	73.14
AT1G17370.1	Thale cress	mitochondrion, nucleus	68.15	73.03
KRH47641	Soybean	nucleus	68.6	72.99
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	70.16	72.58
Bra030985.1-P	Field mustard	mitochondrion, nucleus	67.48	72.49
CDY63384	Canola	mitochondrion, nucleus	67.48	72.49
Solyc03g122180.2.1	Tomato	nucleus	66.15	71.22
PGSC0003DMT400058919	Potato	nucleus	66.15	71.22
VIT_11s0016g00700.t01	Wine grape	mitochondrion, nucleus	66.59	70.85
AT3G14100.1	Thale cress	nucleus	67.04	70.49
KRH19347	Soybean	mitochondrion, nucleus	63.25	69.27
CDY61476	Canola	nucleus	64.37	68.97
Bra030908.1-P	Field mustard	nucleus	64.37	68.97
GSMUA_Achr11P...	Banana	nucleus	68.15	68.92
CDY02486	Canola	nucleus	64.37	68.81
PGSC0003DMT400066072	Potato	nucleus	62.81	68.78
TraesCS2D01G176700.1	Wheat	nucleus	65.26	68.78
Solyc07g042180.2.1	Tomato	nucleus	60.8	68.59
Bra037962.1-P	Field mustard	nucleus	64.14	68.41
CDY51403	Canola	nucleus	63.92	68.33
KRH02581	Soybean	mitochondrion	62.81	68.28
CDY33092	Canola	nucleus	64.37	68.0
PGSC0003DMT400007513	Potato	mitochondrion, nucleus	59.91	67.08
Solyc12g009230.1.1	Tomato	mitochondrion, nucleus	59.69	66.83
AT1G54080.2	Thale cress	nucleus	62.81	65.58
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	69.71	63.1
TraesCS7D01G250300.1	Wheat	mitochondrion, nucleus	58.8	59.06
CDX81822	Canola	mitochondrion, nucleus	67.48	55.6
VIT_04s0043g01000.t01	Wine grape	cytosol, extracellular, mitochondrion	17.59	54.11
TraesCS5D01G250100.1	Wheat	nucleus	20.94	27.49
TraesCS6D01G184600.1	Wheat	cytosol, nucleus, plastid	21.6	23.26
TraesCS2D01G315400.2	Wheat	plastid	21.6	22.88
TraesCS2D01G227900.5	Wheat	nucleus	23.39	22.63
TraesCS2D01G472700.1	Wheat	nucleus	20.27	20.87
TraesCS6D01G081700.2	Wheat	plastid	18.93	20.73
TraesCS4D01G288600.1	Wheat	nucleus	20.94	20.57
TraesCS2D01G266400.1	Wheat	nucleus	15.81	19.94
TraesCS1D01G142300.1	Wheat	nucleus	16.04	19.57
TraesCS3D01G076800.1	Wheat	mitochondrion	10.24	18.47
TraesCS3D01G076700.1	Wheat	mitochondrion	15.81	15.96
TraesCS2D01G358000.1	Wheat	cytosol	21.6	14.61
TraesCS7D01G287900.1	Wheat	cytosol	19.6	13.79
TraesCS5D01G167000.1	Wheat	nucleus, unclear	18.93	13.06
TraesCS2D01G593700.1	Wheat	nucleus	27.39	12.68
TraesCS4D01G205700.1	Wheat	cytosol	17.59	12.1
TraesCS2D01G594800.1	Wheat	nucleus	24.94	11.72
TraesCS2D01G593900.1	Wheat	nucleus	24.5	10.73

Protein Annotations

MapMan:16.9.3	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44160	PANTHER:PTHR44160:SF2
InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SUPFAM:SSF54928
EnsemblPlantsGene:TraesCS4D01G150600	EnsemblPlants:TraesCS4D01G150600.2	TIGR:cd12352	TIGR:cd12354	TIGR:cd12619	SEG:seg

Description

No Description!

Coordinates

chr4D:-:169117330..169124160

Molecular Weight (calculated)

49047.7 Da

IEP (calculated)

7.385

GRAVY (calculated)

-0.429

Length

449 amino acids

Sequence
(BLAST)

001: MQQRMKQAAA VAAQQQQQMM QQALLMHQHQ QQQQAAAAVP PMFPPHHAHP GLLAAPHIEP IVSGNLPPGF DSSTCRSVYV GNIHLQVTDS LLHEVFQSIG
101: PVEGCKLIRK EKSSFGFVDY YDRRYAALAI VSLNGRQLFG QPIKVNWAYA STQREDTSGH FNIFVGDLCP EVTDAALFAF FSAYSTCSDA RVMWDQQTGR
201: SRGFGFVSFR NQQDAQTSIN ELNGKWLGNR QIRCNWATKG ANAGEEKQST DSKGVVELIN GSSEAGKENA NEDGPENNPQ YTTVYVGNLP HDINSNDVHR
301: FFHLLGAGSI EEVRVTRDKG FGFVRYSTHE EAARAIQTGN GQLIGGRQIK CSWGSKPTPP GTASAPLPPP ALAPYTPGVS AVDLISYERS LALSKMAANP
401: ALMGQVAALR QAAMGMGTGA SQAIFDGSFQ SVNPQQQQQQ QQQQQLMYY

Best Arabidopsis Sequence Match ( AT3G14100.1 )
(BLAST)

001: MQNPRLKQHQ QQQQQQAMMQ QQALMQQHSL YHPGVLAPPQ LEPVPSGNLP PGFDPSTCRS VYVGNIHTQV TEPLLQEIFT STGPVESSKL IRKDKSSYGF
101: VHYFDRRSAA LAILSLNGRH LFGQPIKVNW AYATGQREDT SSHFNIFVGD LSPEVTDATL YQSFSVFSSC SDARVMWDQK TGRSRGFGFV SFRNQQDAQT
201: AINEMNGKWL SSRQIRCNWA TKGATSGDDK LSSDGKSVVE LTTGSSEDGK ETLNEETPEN NSQFTTVYVG NLAPEVTQLD LHRYFHALGA GVIEEVRVQR
301: DKGFGFVRYN THPEAALAIQ MGNTQPYLFN RQIKCSWGNK PTPPGTASNP LPPPAPAPVP GLSAADLLNY ERQLALSKMA SVNALMHQQG QHPLRQAHGI
401: NAAGATAAMY DGGFQNVAAA QQLMYYQ

Arabidopsis Description

UBP1COligouridylate-binding protein 1C [Source:UniProtKB/Swiss-Prot;Acc:Q9LJH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.