Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G172000.1 | |
| TraesCS3B01G202800.2 | |
| TraesCS3D01G178500.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16500.1 | TraesCS3A01G172000.1 | AT4G02150.1 | 21798944 |
| AT1G16500.1 | TraesCS3B01G202800.2 | AT4G02150.1 | 21798944 |
| AT1G16500.1 | TraesCS3D01G178500.1 | AT4G02150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G296700.1 | Wheat | nucleus | 85.59 | 85.22 |
| TraesCS4B01G017000.1 | Wheat | nucleus | 79.91 | 82.06 |
| Zm00001d033459_P001 | Maize | cytosol | 61.14 | 61.67 |
| Zm00001d013615_P001 | Maize | cytosol | 59.83 | 59.83 |
| EER91121 | Sorghum | cytosol | 56.33 | 53.53 |
| HORVU4Hr1G002540.1 | Barley | plastid | 72.49 | 49.55 |
| Os03t0660700-01 | Rice | nucleus | 39.74 | 47.4 |
| Zm00001d013614_P001 | Maize | cytosol | 13.1 | 38.96 |
| TraesCS2D01G459700.1 | Wheat | cytosol | 32.31 | 35.58 |
| GSMUA_Achr7P03500_001 | Banana | cytosol | 32.31 | 34.58 |
| GSMUA_AchrUn_... | Banana | cytosol | 31.44 | 34.45 |
| Solyc07g066570.2.1 | Tomato | cytosol | 27.95 | 33.68 |
| TraesCS2D01G459600.1 | Wheat | cytosol | 32.75 | 33.63 |
| GSMUA_Achr1P25720_001 | Banana | cytosol | 31.0 | 33.18 |
| GSMUA_Achr11P... | Banana | cytosol | 34.5 | 32.78 |
| TraesCS2D01G459800.1 | Wheat | nucleus | 30.57 | 31.67 |
| PGSC0003DMT400056874 | Potato | cytosol | 29.69 | 30.91 |
| GSMUA_Achr9P30650_001 | Banana | cytosol | 30.13 | 30.67 |
| VIT_10s0092g00640.t01 | Wine grape | cytosol | 29.26 | 30.45 |
| VIT_19s0085g00030.t01 | Wine grape | cytosol | 27.51 | 29.3 |
| KRH13717 | Soybean | nucleus | 28.82 | 26.29 |
| Bra035096.1-P | Field mustard | nucleus | 26.2 | 25.75 |
| AT1G79160.1 | Thale cress | cytosol | 26.2 | 25.1 |
| CDY37016 | Canola | nucleus | 25.76 | 25.0 |
| CDX88511 | Canola | nucleus | 25.76 | 25.0 |
| CDX76373 | Canola | nucleus | 25.76 | 25.0 |
| CDX79304 | Canola | cytosol | 24.45 | 24.78 |
| AT1G16500.1 | Thale cress | cytosol | 27.95 | 24.71 |
| Bra026718.1-P | Field mustard | nucleus | 25.33 | 23.97 |
| CDY51001 | Canola | nucleus | 24.89 | 23.36 |
| CDY55881 | Canola | cytosol, nucleus, plastid | 24.89 | 23.27 |
| Bra026046.1-P | Field mustard | cytosol, nucleus, plastid | 24.89 | 23.27 |
| CDY68470 | Canola | cytosol, nucleus, plastid | 24.02 | 22.45 |
| CDX81765 | Canola | cytosol | 23.58 | 22.41 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G015300.1 | EnsemblPlantsGene:TraesCS4D01G015300 | PANTHER:PTHR33177 | PANTHER:PTHR33177:SF7 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr4D:-:6778254..6779628
Molecular Weight (calculated)
23580.0 Da
IEP (calculated)
8.420
GRAVY (calculated)
-0.408
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAEAVGFMM SRAADGGTMA PELVTRDFLG GCQAPAPGDD PRHDAAARHD SVMPGKPPLQ KHRSPPPSAR GDLNLFPASG AAMAPLPTMA PAADCAATTT
101: YHSVCTIEKV KTALERFERG KQGQGQHHHQ QQHSGAGATA GASPSSSSVT TSSVKRRGDA GAVEQGDGCD SPSAGGGMVA AACPRCFLYV LIARSDPRCP
201: RCESHVPPPP APAPKKKPRI DLNVGFLGT
101: YHSVCTIEKV KTALERFERG KQGQGQHHHQ QQHSGAGATA GASPSSSSVT TSSVKRRGDA GAVEQGDGCD SPSAGGGMVA AACPRCFLYV LIARSDPRCP
201: RCESHVPPPP APAPKKKPRI DLNVGFLGT
001: MILDMAADVS SLVRLLSGYK DDRAVVKDSA GAKSSAALMT RDLLGNGRGG GGDRSLELDL DLQVPTGYEK RLDLKSGKVY LQRCNSTSSS SITNADQTNQ
101: TVPTFQDLNF PPPTLNNSPL LNLFDDTTPE LKLLPSSRSS RPNTSNLQSV CTLDKVKSAL ERAERDPAMF KKRQSPDDTV YDHYRTEAVA SPVVAGCPGC
201: LSYVLVMMNN PKCPRCDTIV PLPTNPMKKK PKIDLNISI
101: TVPTFQDLNF PPPTLNNSPL LNLFDDTTPE LKLLPSSRSS RPNTSNLQSV CTLDKVKSAL ERAERDPAMF KKRQSPDDTV YDHYRTEAVA SPVVAGCPGC
201: LSYVLVMMNN PKCPRCDTIV PLPTNPMKKK PKIDLNISI
Arabidopsis Description
Filamentous hemagglutinin transporter [Source:UniProtKB/TrEMBL;Acc:Q84JL6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.