Subcellular Localization
min:
: max
Winner_takes_all: golgi, nucleus
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
golgi:
23128297
golgi: 25769308 nucleus: 26228564 nucleus: 28628250 |
msms PMID:
25769308
doi
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
msms PMID:
28628250
doi
LIMOS, CNRS, Université Blaise Pascal, Aubière, 63173, France., UMR GDEC, INRA, Université Clermont Auvergne, 5 chemin de Beaulieu, Clermont-Ferrand, 63039, France., UMR GQE, INRA, Université Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Gif-sur-Yvette, 91190, France.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G178500.1 | Wheat | cytosol | 100.0 | 100.0 |
| HORVU3Hr1G034750.5 | Barley | cytosol | 99.43 | 97.75 |
| TraesCS3B01G202800.2 | Wheat | cytosol | 93.13 | 90.88 |
| Os01t0253300-01 | Rice | cytosol | 90.46 | 90.11 |
| KXG32187 | Sorghum | cytosol | 89.89 | 89.2 |
| Zm00001d040274_P001 | Maize | cytosol | 89.5 | 88.66 |
| Zm00001d008345_P003 | Maize | cytosol | 89.31 | 88.3 |
| VIT_07s0005g01100.t01 | Wine grape | cytosol | 81.49 | 80.72 |
| PGSC0003DMT400076860 | Potato | cytosol | 81.49 | 80.72 |
| PGSC0003DMT400018802 | Potato | cytosol | 78.82 | 78.37 |
| Solyc06g009750.2.1 | Tomato | nucleus | 78.63 | 78.18 |
| TraesCS1A01G097400.1 | Wheat | nucleus | 79.2 | 77.72 |
| Solyc08g041890.2.1 | Tomato | nucleus | 81.3 | 73.83 |
| AT4G02150.1 | Thale cress | cytosol | 71.76 | 70.81 |
| AT1G02690.2 | Thale cress | cytosol | 72.71 | 70.69 |
| CDY01921 | Canola | cytosol | 70.61 | 69.68 |
| Bra008559.1-P | Field mustard | cytosol | 70.23 | 69.3 |
| CDX97257 | Canola | cytosol | 70.23 | 69.3 |
| Bra033342.1-P | Field mustard | cytosol | 67.75 | 68.14 |
| CDX89948 | Canola | cytosol | 67.56 | 67.95 |
| CDY64806 | Canola | cytosol | 66.03 | 66.8 |
| CDX90948 | Canola | cytosol | 64.89 | 65.64 |
| Bra000891.1-P | Field mustard | cytosol | 64.69 | 65.44 |
| CDY15260 | Canola | cytosol | 67.18 | 45.42 |
| TraesCS2A01G097100.1 | Wheat | cytosol | 48.66 | 45.29 |
| PGSC0003DMT400076768 | Potato | cytosol, extracellular, mitochondrion, plastid | 7.06 | 41.57 |
| TraesCS3A01G309900.2 | Wheat | plastid | 30.34 | 28.29 |
Protein Annotations
| Gene3D:1.20.5.690 | Gene3D:1.25.10.10 | MapMan:23.5.1.3 | InterPro:ARM-like | InterPro:ARM-type_fold | InterPro:Arm_3 |
| InterPro:Armadillo | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006606 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0008565 | GO:GO:0061608 | InterPro:IPR000225 | InterPro:IPR002652 | InterPro:IPR011989 |
| InterPro:IPR036975 | InterPro:Importin-a_IBB | InterPro:Importin-a_IBB_sf | InterPro:Importing_su_alpha | PFAM:PF00514 | PFAM:PF01749 |
| PFAM:PF16186 | PIRSF:PIRSF005673 | PFscan:PS50176 | PFscan:PS51214 | PANTHER:PTHR23316 | PANTHER:PTHR23316:SF22 |
| SMART:SM00185 | SUPFAM:SSF48371 | EnsemblPlantsGene:TraesCS3A01G172000 | EnsemblPlants:TraesCS3A01G172000.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr3A:+:186745929..186749707
Molecular Weight (calculated)
57320.4 Da
IEP (calculated)
4.813
GRAVY (calculated)
-0.238
Length
524 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVRPSERAD ARRNRYKVTV DADEGRRRRE DNMVEIRKNR REESLLKKRR EGLQAQAPIP AAGVEKKLES LPAMVGGVYS EDNNLQLEAT TQFRKLLSIE
101: RSPPIEEVIQ SGVVPRFVQF LTREDFPQLQ FEAAWALTNI ASGTSENTKV VIDHGAVPIF VKLLASGSDD VREQAVWALG NVAGDSPKCR DLVLANGALM
201: PLLAQLNEHA KLSMLRNATW TLSNFCRGKP QPAFDQTKPA LPALARLIHS NDEEVLTDAC WALSYLSDGT NDKIQSVIDA GVCPRLVELL LHPSPSVLIP
301: ALRTVGNIVT GDDSQTQCII DHQALGCLLS LLTQNHKKSI KKEACWTVSN ITAGNKDQIQ AVITAGIIGP LVHLLQTAEF DIKKEAAWAI SNATSGGSHD
401: QIKYLVSEGC IKPLCDLLLC PDPRIVTVCL EGLENILKVG ETDKNLGASG EGNVYAQMID EAEGLEKIEN LQSHDNNEIY EKAVKILEAY WMEEEDDAMG
501: ATMEAPTGVA FDFGQGGNPD LNLG
101: RSPPIEEVIQ SGVVPRFVQF LTREDFPQLQ FEAAWALTNI ASGTSENTKV VIDHGAVPIF VKLLASGSDD VREQAVWALG NVAGDSPKCR DLVLANGALM
201: PLLAQLNEHA KLSMLRNATW TLSNFCRGKP QPAFDQTKPA LPALARLIHS NDEEVLTDAC WALSYLSDGT NDKIQSVIDA GVCPRLVELL LHPSPSVLIP
301: ALRTVGNIVT GDDSQTQCII DHQALGCLLS LLTQNHKKSI KKEACWTVSN ITAGNKDQIQ AVITAGIIGP LVHLLQTAEF DIKKEAAWAI SNATSGGSHD
401: QIKYLVSEGC IKPLCDLLLC PDPRIVTVCL EGLENILKVG ETDKNLGASG EGNVYAQMID EAEGLEKIEN LQSHDNNEIY EKAVKILEAY WMEEEDDAMG
501: ATMEAPTGVA FDFGQGGNPD LNLG
001: MSLRPNAKTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKSK REESLQKKRR EGLQANQLPQ FAPSPVPASS TVEKKLESLP AMVGGVWSDD RSLQLEATTQ
101: FRKLLSIERS PPIEEVIDAG VVPRFVEFLT REDYPQLQFE AAWALTNIAS GTSENTKVVI EHGAVPIFVQ LLASQSDDVR EQAVWALGNV AGDSPRCRDL
201: VLGQGALIPL LSQLNEHAKL SMLRNATWTL SNFCRGKPQP PFDQVRPALP ALERLIHSTD EEVLTDACWA LSYLSDGTND KIQSVIEAGV VPRLVELLQH
301: QSPSVLIPAL RSIGNIVTGD DLQTQCVISH GALLSLLSLL THNHKKSIKK EACWTISNIT AGNRDQIQAV CEAGLICPLV NLLQNAEFDI KKEAAWAISN
401: ATSGGSPDQI KYMVEQGVVK PLCDLLVCPD PRIITVCLEG LENILKVGEA EKVTGNTGDV NFYAQLIDDA EGLEKIENLQ SHDNSEIYEK AVKILETYWL
501: EEEDETLPPG DPSAQGFQFG GGNDAAVPPG GFNFQ
101: FRKLLSIERS PPIEEVIDAG VVPRFVEFLT REDYPQLQFE AAWALTNIAS GTSENTKVVI EHGAVPIFVQ LLASQSDDVR EQAVWALGNV AGDSPRCRDL
201: VLGQGALIPL LSQLNEHAKL SMLRNATWTL SNFCRGKPQP PFDQVRPALP ALERLIHSTD EEVLTDACWA LSYLSDGTND KIQSVIEAGV VPRLVELLQH
301: QSPSVLIPAL RSIGNIVTGD DLQTQCVISH GALLSLLSLL THNHKKSIKK EACWTISNIT AGNRDQIQAV CEAGLICPLV NLLQNAEFDI KKEAAWAISN
401: ATSGGSPDQI KYMVEQGVVK PLCDLLVCPD PRIITVCLEG LENILKVGEA EKVTGNTGDV NFYAQLIDDA EGLEKIENLQ SHDNSEIYEK AVKILETYWL
501: EEEDETLPPG DPSAQGFQFG GGNDAAVPPG GFNFQ
Arabidopsis Description
IMPA2Importin subunit alpha-2 [Source:UniProtKB/Swiss-Prot;Acc:F4JL11]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.