Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G137000.1 | Wheat | plastid | 99.47 | 99.47 |
| TraesCS6B01G175800.1 | Wheat | plastid | 97.34 | 97.34 |
| Os02t0180200-01 | Rice | plasma membrane, plastid | 86.17 | 87.57 |
| EES04638 | Sorghum | plastid | 84.57 | 85.95 |
| Zm00001d053743_P002 | Maize | plastid | 84.57 | 71.95 |
| Bra039224.1-P | Field mustard | plastid | 61.7 | 63.39 |
| CDX76844 | Canola | plastid | 61.7 | 63.39 |
| CDY34804 | Canola | plastid | 61.7 | 63.39 |
| AT4G30620.1 | Thale cress | plastid | 59.57 | 62.22 |
| Bra010280.1-P | Field mustard | plastid | 60.11 | 61.75 |
| CDY23248 | Canola | plastid | 59.57 | 61.54 |
| GSMUA_Achr4P20470_001 | Banana | plastid | 62.77 | 61.46 |
| CDY55614 | Canola | plastid | 56.38 | 61.27 |
| PGSC0003DMT400020463 | Potato | mitochondrion | 59.57 | 60.87 |
| Solyc12g009980.1.1 | Tomato | plastid | 59.57 | 60.87 |
| VIT_11s0037g00330.t01 | Wine grape | plastid | 63.3 | 60.71 |
| AT2G24020.1 | Thale cress | plastid | 58.51 | 60.44 |
| KRH55034 | Soybean | plastid | 61.17 | 58.97 |
| KRH26162 | Soybean | plastid | 61.17 | 58.67 |
| PGSC0003DMT400067633 | Potato | plastid | 58.51 | 57.29 |
| Solyc08g006780.2.1 | Tomato | plastid | 56.91 | 55.73 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 65.96 | 54.39 |
| Zm00001d015505_P001 | Maize | plastid | 80.32 | 51.01 |
| CDY45942 | Canola | nucleus | 32.45 | 23.37 |
| Bra008272.1-P | Field mustard | nucleus | 32.45 | 23.37 |
| CDY20394 | Canola | nucleus | 32.45 | 23.19 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G147700.1 | EnsemblPlantsGene:TraesCS6A01G147700 | Gene3D:3.30.1310.10 | InterPro:IPR036894 | InterPro:YbaB-like_sf | InterPro:YbaB/EbfC |
| ncoils:Coil | PANTHER:PTHR33449 | PANTHER:PTHR33449:SF3 | PFAM:PF02575 | SUPFAM:SSF82607 | MapMan:23.1.7.2 |
Description
No Description!
Coordinates
chr6A:-:127880845..127885824
Molecular Weight (calculated)
20319.3 Da
IEP (calculated)
7.190
GRAVY (calculated)
-0.351
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSTALSPV AFKSSFSPLP SRPARTSINV QGAFCLPCST WKRANNRSFR VYSLFGGKKE KDENGDEAPS KGGIFGNIGN MQNLYETVKK AQMVVQVEAV
101: RVQKELAATE IEGYCEGELI KVTLSGNQQP INVEITEAAM ELGAEKVSEL VNEAYKDAHQ RSVQAMKERM ADLAQSIGMP AGLGDGLK
101: RVQKELAATE IEGYCEGELI KVTLSGNQQP INVEITEAAM ELGAEKVSEL VNEAYKDAHQ RSVQAMKERM ADLAQSIGMP AGLGDGLK
001: MASMAATTNF TKSMLFPFSH VSGNASLNSQ RRTWPKQYKS KNGYRSLRVN GLFGGGNKDN NSEDGQSKAG IFGNMQNMYE TVKKAQMVVQ VEAVRVQKEL
101: AAAEFDGYCA GELVKVTLSG NQQPIRTDIT EAAMELGSEK LSQLVTEAYK DAHAKSVVAM KERMSDLAQS LGMPPGLSEG MK
101: AAAEFDGYCA GELVKVTLSG NQQPIRTDIT EAAMELGSEK LSQLVTEAYK DAHAKSVVAM KERMSDLAQS LGMPPGLSEG MK
Arabidopsis Description
STIC2Nucleoid-associated protein At2g24020, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82230]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.