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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 1
  • plastid 7
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY34804 Canola plastid 82.42 81.97
Bra039224.1-P Field mustard plastid 81.87 81.42
CDX76844 Canola plastid 81.87 81.42
AT4G30620.1 Thale cress plastid 75.82 76.67
Solyc12g009980.1.1 Tomato plastid 64.84 64.13
PGSC0003DMT400020463 Potato mitochondrion 64.29 63.59
VIT_11s0037g00330.t01 Wine grape plastid 68.13 63.27
EES04638 Sorghum plastid 63.19 62.16
Os02t0180200-01 Rice plasma membrane, plastid 62.09 61.08
KRH26162 Soybean plastid 65.38 60.71
KRH55034 Soybean plastid 64.84 60.51
GSMUA_Achr4P20470_001 Banana plastid 63.19 59.9
TraesCS6A01G147700.1 Wheat plastid 60.44 58.51
TraesCS6D01G137000.1 Wheat plastid 59.89 57.98
TraesCS6B01G175800.1 Wheat plastid 59.34 57.45
Zm00001d053743_P002 Maize plastid 64.29 52.94
GSMUA_AchrUn_... Banana mitochondrion 65.93 52.63
Zm00001d015505_P001 Maize plastid 60.44 37.16
Protein Annotations
MapMan:23.1.7.2Gene3D:3.30.1310.10EntrezGene:816936UniProt:A0A178VWV6ProteinID:AAC63670.2ProteinID:AEC07518.1
ProteinID:AEC07519.1ArrayExpress:AT2G24020EnsemblPlantsGene:AT2G24020RefSeq:AT2G24020TAIR:AT2G24020RefSeq:AT2G24020-TAIR-G
EnsemblPlants:AT2G24020.1TAIR:AT2G24020.1EMBL:AY048234EMBL:AY091702Unigene:At.25545GO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0006810GO:GO:0008150GO:GO:0009507GO:GO:0009535
GO:GO:0009536GO:GO:0009570GO:GO:0009579GO:GO:0009941GO:GO:0016020GO:GO:0045037
InterPro:IPR036894RefSeq:NP_001189586.1RefSeq:NP_565561.1UniProt:O82230ProteinID:OAP10316.1PFAM:PF02575
PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078
PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098
PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007131PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047
PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022
PO:PO:0025281PANTHER:PTHR33449PANTHER:PTHR33449:SF3SUPFAM:SSF82607TIGRFAMs:TIGR00103UniParc:UPI00000A6A85
InterPro:YbaB-like_sfInterPro:YbaB/EbfC::::
Description
STIC2Nucleoid-associated protein At2g24020, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82230]
Coordinates
chr2:-:10217701..10219468
Molecular Weight (calculated)
19812.7 Da
IEP (calculated)
9.615
GRAVY (calculated)
-0.484
Length
182 amino acids
Sequence
(BLAST)
001: MASMAATTNF TKSMLFPFSH VSGNASLNSQ RRTWPKQYKS KNGYRSLRVN GLFGGGNKDN NSEDGQSKAG IFGNMQNMYE TVKKAQMVVQ VEAVRVQKEL
101: AAAEFDGYCA GELVKVTLSG NQQPIRTDIT EAAMELGSEK LSQLVTEAYK DAHAKSVVAM KERMSDLAQS LGMPPGLSEG MK
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.