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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 2
  • plastid 8
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
EpiLoc:nucleus
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:cytosol
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
plastid: 22908117
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400020463 Potato mitochondrion 98.37 98.37
CDY23248 Canola plastid 66.3 67.03
KRH26162 Soybean plastid 71.2 66.84
CDY55614 Canola plastid 62.5 66.47
Bra010280.1-P Field mustard plastid 65.76 66.12
Bra039224.1-P Field mustard plastid 65.22 65.57
CDX76844 Canola plastid 65.22 65.57
CDY34804 Canola plastid 65.22 65.57
AT4G30620.1 Thale cress plastid 63.59 65.0
AT2G24020.1 Thale cress plastid 64.13 64.84
VIT_11s0037g00330.t01 Wine grape plastid 69.02 64.8
KRH55034 Soybean plastid 68.48 64.62
EES04638 Sorghum plastid 62.5 62.16
Os02t0180200-01 Rice plasma membrane, plastid 61.96 61.62
GSMUA_Achr4P20470_001 Banana plastid 63.59 60.94
TraesCS6B01G175800.1 Wheat plastid 61.41 60.11
TraesCS6A01G147700.1 Wheat plastid 60.87 59.57
TraesCS6D01G137000.1 Wheat plastid 60.87 59.57
Solyc08g006780.2.1 Tomato plastid 61.41 58.85
Zm00001d053743_P002 Maize plastid 63.04 52.49
GSMUA_AchrUn_... Banana mitochondrion 63.59 51.32
Zm00001d015505_P001 Maize plastid 61.41 38.18
CDY45942 Canola nucleus 36.96 26.05
Bra008272.1-P Field mustard nucleus 36.96 26.05
CDY20394 Canola nucleus 36.96 25.86
Protein Annotations
EnsemblPlants:Solyc12g009980.1.1EnsemblPlantsGene:Solyc12g009980.1Gene3D:3.30.1310.10InterPro:IPR036894InterPro:YbaB-like_sfInterPro:YbaB/EbfC
PANTHER:PTHR33449PANTHER:PTHR33449:SF3PFAM:PF02575SUPFAM:SSF82607UniParc:UPI0002769CC7UniProt:K4DC86
MapMan:23.1.7.2:::::
Description
No Description!
Coordinates
chr12:+:3123673..3130024
Molecular Weight (calculated)
20002.1 Da
IEP (calculated)
8.319
GRAVY (calculated)
-0.376
Length
184 amino acids
Sequence
(BLAST)
001: MASTSAFTAG ISNLHSFKKP CPNANQVGMW TLSRPGCRKV LDNPRPLQIC SLFGGKKDNN EQNNDAPSKA GLFGNMQNLY ETVKKAQNVV QVEAVRVQKE
101: LALAEFDGYC EGELIKVTLS GNQQPIRTEI TEAAMALGPE KLSLLITEAY KDAHQKSVLA MKERMSDLAQ SLGMPAGLGE GFKQ
Best Arabidopsis Sequence Match ( AT2G24020.1 )
(BLAST)
001: MASMAATTNF TKSMLFPFSH VSGNASLNSQ RRTWPKQYKS KNGYRSLRVN GLFGGGNKDN NSEDGQSKAG IFGNMQNMYE TVKKAQMVVQ VEAVRVQKEL
101: AAAEFDGYCA GELVKVTLSG NQQPIRTDIT EAAMELGSEK LSQLVTEAYK DAHAKSVVAM KERMSDLAQS LGMPPGLSEG MK
Arabidopsis Description
STIC2Nucleoid-associated protein At2g24020, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82230]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.