Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 8
- cytosol 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plastid:
22908117
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400020463 | Potato | mitochondrion | 98.37 | 98.37 |
CDY23248 | Canola | plastid | 66.3 | 67.03 |
KRH26162 | Soybean | plastid | 71.2 | 66.84 |
CDY55614 | Canola | plastid | 62.5 | 66.47 |
Bra010280.1-P | Field mustard | plastid | 65.76 | 66.12 |
Bra039224.1-P | Field mustard | plastid | 65.22 | 65.57 |
CDX76844 | Canola | plastid | 65.22 | 65.57 |
CDY34804 | Canola | plastid | 65.22 | 65.57 |
AT4G30620.1 | Thale cress | plastid | 63.59 | 65.0 |
AT2G24020.1 | Thale cress | plastid | 64.13 | 64.84 |
VIT_11s0037g00330.t01 | Wine grape | plastid | 69.02 | 64.8 |
KRH55034 | Soybean | plastid | 68.48 | 64.62 |
EES04638 | Sorghum | plastid | 62.5 | 62.16 |
Os02t0180200-01 | Rice | plasma membrane, plastid | 61.96 | 61.62 |
GSMUA_Achr4P20470_001 | Banana | plastid | 63.59 | 60.94 |
TraesCS6B01G175800.1 | Wheat | plastid | 61.41 | 60.11 |
TraesCS6A01G147700.1 | Wheat | plastid | 60.87 | 59.57 |
TraesCS6D01G137000.1 | Wheat | plastid | 60.87 | 59.57 |
Solyc08g006780.2.1 | Tomato | plastid | 61.41 | 58.85 |
Zm00001d053743_P002 | Maize | plastid | 63.04 | 52.49 |
GSMUA_AchrUn_... | Banana | mitochondrion | 63.59 | 51.32 |
Zm00001d015505_P001 | Maize | plastid | 61.41 | 38.18 |
CDY45942 | Canola | nucleus | 36.96 | 26.05 |
Bra008272.1-P | Field mustard | nucleus | 36.96 | 26.05 |
CDY20394 | Canola | nucleus | 36.96 | 25.86 |
Protein Annotations
EnsemblPlants:Solyc12g009980.1.1 | EnsemblPlantsGene:Solyc12g009980.1 | Gene3D:3.30.1310.10 | InterPro:IPR036894 | InterPro:YbaB-like_sf | InterPro:YbaB/EbfC |
PANTHER:PTHR33449 | PANTHER:PTHR33449:SF3 | PFAM:PF02575 | SUPFAM:SSF82607 | UniParc:UPI0002769CC7 | UniProt:K4DC86 |
MapMan:23.1.7.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr12:+:3123673..3130024
Molecular Weight (calculated)
20002.1 Da
IEP (calculated)
8.319
GRAVY (calculated)
-0.376
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTSAFTAG ISNLHSFKKP CPNANQVGMW TLSRPGCRKV LDNPRPLQIC SLFGGKKDNN EQNNDAPSKA GLFGNMQNLY ETVKKAQNVV QVEAVRVQKE
101: LALAEFDGYC EGELIKVTLS GNQQPIRTEI TEAAMALGPE KLSLLITEAY KDAHQKSVLA MKERMSDLAQ SLGMPAGLGE GFKQ
101: LALAEFDGYC EGELIKVTLS GNQQPIRTEI TEAAMALGPE KLSLLITEAY KDAHQKSVLA MKERMSDLAQ SLGMPAGLGE GFKQ
001: MASMAATTNF TKSMLFPFSH VSGNASLNSQ RRTWPKQYKS KNGYRSLRVN GLFGGGNKDN NSEDGQSKAG IFGNMQNMYE TVKKAQMVVQ VEAVRVQKEL
101: AAAEFDGYCA GELVKVTLSG NQQPIRTDIT EAAMELGSEK LSQLVTEAYK DAHAKSVVAM KERMSDLAQS LGMPPGLSEG MK
101: AAAEFDGYCA GELVKVTLSG NQQPIRTDIT EAAMELGSEK LSQLVTEAYK DAHAKSVVAM KERMSDLAQS LGMPPGLSEG MK
Arabidopsis Description
STIC2Nucleoid-associated protein At2g24020, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82230]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.