Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45942 | Canola | nucleus | 91.64 | 92.34 |
| CDY55614 | Canola | plastid | 28.52 | 43.35 |
| CDY23248 | Canola | plastid | 28.9 | 41.76 |
| CDY34804 | Canola | plastid | 28.9 | 41.53 |
| CDX76844 | Canola | plastid | 28.9 | 41.53 |
| GSMUA_Achr4P20470_001 | Banana | plastid | 27.0 | 36.98 |
| Solyc12g009980.1.1 | Tomato | plastid | 25.86 | 36.96 |
| PGSC0003DMT400020463 | Potato | mitochondrion | 25.86 | 36.96 |
| KRH55034 | Soybean | plastid | 27.38 | 36.92 |
| KRH26162 | Soybean | plastid | 27.38 | 36.73 |
| Os02t0180200-01 | Rice | plasma membrane, plastid | 25.1 | 35.68 |
| VIT_11s0037g00330.t01 | Wine grape | plastid | 26.24 | 35.2 |
| EES04638 | Sorghum | plastid | 24.33 | 34.59 |
| TraesCS6A01G147700.1 | Wheat | plastid | 23.19 | 32.45 |
| TraesCS6B01G175800.1 | Wheat | plastid | 23.19 | 32.45 |
| TraesCS6D01G137000.1 | Wheat | plastid | 23.19 | 32.45 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 26.24 | 30.26 |
| Zm00001d053743_P002 | Maize | plastid | 24.71 | 29.41 |
| Zm00001d015505_P001 | Maize | plastid | 24.33 | 21.62 |
Protein Annotations
| EnsemblPlants:CDY20394 | EnsemblPlantsGene:GSBRNA2T00012421001 | Gene3D:3.30.1310.10 | InterPro:IPR036894 | InterPro:YbaB-like_sf | InterPro:YbaB/EbfC |
| PANTHER:PTHR33449 | PANTHER:PTHR33449:SF3 | PFAM:PF02575 | ProteinID:CDY20394 | ProteinID:CDY20394.1 | SEG:seg |
| SUPFAM:SSF82607 | UniParc:UPI0004EE0DE4 | UniProt:A0A078G4U2 | MapMan:23.1.7.2 | : | : |
Description
BnaC02g24220DBnaC02g24220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G4U2]
Coordinates
chrLK032107:-:300916..302571
Molecular Weight (calculated)
29509.4 Da
IEP (calculated)
10.215
GRAVY (calculated)
-0.708
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFHRMKRKE LQGMCKKHGV PANLKKIEMA YRLTSLLEDG QSKNMFETTV KKAQVESVQK ELDVEEFDGY CEGELVKVTL SVNQEPIRTD ITEAAMELGS
101: EKLSLLVTEA YKDAYAKSVV VKEEEEEENV VGSRKVKKVK FSPESENQVF EFTRSLKKLP RRKNARTCSS QGGGSIELRR SKRTASKGAT VAAGCNGNSA
201: SGIVKPAKVS SSLVEEHKVP RGKYDYKVEV VLRRSKRFAN DIIKNANETL LNSSKRVTRR RGA
101: EKLSLLVTEA YKDAYAKSVV VKEEEEEENV VGSRKVKKVK FSPESENQVF EFTRSLKKLP RRKNARTCSS QGGGSIELRR SKRTASKGAT VAAGCNGNSA
201: SGIVKPAKVS SSLVEEHKVP RGKYDYKVEV VLRRSKRFAN DIIKNANETL LNSSKRVTRR RGA
0001: MNFHGMKRKD LQALCKKNGI PANLKNIEMA TRLASVLQKE TEGTLTDTIS LSEDSVDVLE DDVAVKKVRF SPENEVFEFT RSLKRCQRKY VSKRKVQESG
0101: IELRRSKRSV AKGKAIAGSS ENESNTRRGN RSDVTKAIEV PRRSKRSGST GSSQEDCKVT ELMALEQFEF ENISEGLSGS DQDGFKFEKI GRRSTQLISK
0201: TGNLLPVNKS KRLVDIKDNE DELVKNNVNE VSMDQRRSIR LKARAANQSM GGESSDGRPL CSAKETKEEI KIKQSKRSTV VSSQKELVER KAKEPLVDSK
0301: VPRRSKRLAN DVNVLLDKRP VKAVKPDYLK VKKAPKQSRR LEKSLSELLI DGQAQKGDKQ RTFGNGREGK KLLRSSKHTA SNNMLGQALS NSLKRCSVID
0401: GERAGVSVGD VKKSNVNNEM QIRVRVTRNS SRHHSFKAPI EFERNLIEKK SDETFVKSSK RGTRRMKRGR SAEPGKDIET QSNLTSKKLL NEYTQFEQEE
0501: ACDANVEVRG SSKKAKTMNQ ECVKDIPQVM TENSPSSSET IAAESVMIVE NVLDSSPEKS VDSSQRTNTQ ELNSEVMEGK HEEKLEGDTV LMVAIEEEKK
0601: EVSSSSVLLS ERLSPTSVQF AVSNSKAELV VPTGHILLND FAEENSKTKE EGLIFTPVSE LKEPISVEAI LENSVECWNE IHLSKHDEKG TNIQAENLHG
0701: NFSECNTENS KVVIVHPEML DEISVSHCVD LEMLDEVKNG NLEKSEQRSG CKLNPLELKR FSSTDFTSHS LKEKKVSKCF KEDELRAWSE PLPRNKNASA
0801: FDELAIFTTP ERNLMLRGKL SENGKTLAAD SVIHHNVIAV ESHAVVFTAS KQAGTDEAGK EEEHTATNFP DESDVFNTTK KLGGSRQTEA RNEGESIVVE
0901: LHDESDIATS LERQLSAGDS KGEGIGRNEE NMTVELHCEP DTCTSPDGHT LLGNYVSDGA ENSEENKAME FNDESVDLTA SERHEICRSF GQDRARESEG
1001: KKVVLFYEES LHSDQPLADS ELGEAECQEI NSADKSSLFT SLERQQLFYE CYVPNVREDS ERDEAATSEE NKAVELQVDC GIFTTPEKHL LLETDEGVKG
1101: DNITAKSHVL SDVLAADVPH SLMGDSEPDE AEKTSVEIKD VELLGESNSS TNPESPTLFG NSELDESRDS SAATCEEAFV TTSPEKELLI NPGKQEQKEV
1201: DENVVQESHV AAPDFRGNTI VDSSGGIASK VSYNHELNAG QETACAELMS KGSQAEDVVG LDATQGTSKK RRGHSPHADS VNLFDSNIEE VDTIMEAERN
1301: ISFSSYVAVP AEGNSETIGE ISSYLEVAGT CSMVFDESGS STDIQNQIND ALKEWAITDK NEADELIEAI VTKNIQKDFE GNLLLNSSGG GSNVSGETSI
1401: LAGTADEDEA AGPIAIAFVK AMSLTPDELT VKNHMNEKAA DEEMITRETT PIPEETINES SENRKEYSSI DESATLSEMQ VRREPTLIFR TQVKPTKHDM
1501: KENAPNSKIV HNLNVTAPRT SKRQPLQDLN KN
0101: IELRRSKRSV AKGKAIAGSS ENESNTRRGN RSDVTKAIEV PRRSKRSGST GSSQEDCKVT ELMALEQFEF ENISEGLSGS DQDGFKFEKI GRRSTQLISK
0201: TGNLLPVNKS KRLVDIKDNE DELVKNNVNE VSMDQRRSIR LKARAANQSM GGESSDGRPL CSAKETKEEI KIKQSKRSTV VSSQKELVER KAKEPLVDSK
0301: VPRRSKRLAN DVNVLLDKRP VKAVKPDYLK VKKAPKQSRR LEKSLSELLI DGQAQKGDKQ RTFGNGREGK KLLRSSKHTA SNNMLGQALS NSLKRCSVID
0401: GERAGVSVGD VKKSNVNNEM QIRVRVTRNS SRHHSFKAPI EFERNLIEKK SDETFVKSSK RGTRRMKRGR SAEPGKDIET QSNLTSKKLL NEYTQFEQEE
0501: ACDANVEVRG SSKKAKTMNQ ECVKDIPQVM TENSPSSSET IAAESVMIVE NVLDSSPEKS VDSSQRTNTQ ELNSEVMEGK HEEKLEGDTV LMVAIEEEKK
0601: EVSSSSVLLS ERLSPTSVQF AVSNSKAELV VPTGHILLND FAEENSKTKE EGLIFTPVSE LKEPISVEAI LENSVECWNE IHLSKHDEKG TNIQAENLHG
0701: NFSECNTENS KVVIVHPEML DEISVSHCVD LEMLDEVKNG NLEKSEQRSG CKLNPLELKR FSSTDFTSHS LKEKKVSKCF KEDELRAWSE PLPRNKNASA
0801: FDELAIFTTP ERNLMLRGKL SENGKTLAAD SVIHHNVIAV ESHAVVFTAS KQAGTDEAGK EEEHTATNFP DESDVFNTTK KLGGSRQTEA RNEGESIVVE
0901: LHDESDIATS LERQLSAGDS KGEGIGRNEE NMTVELHCEP DTCTSPDGHT LLGNYVSDGA ENSEENKAME FNDESVDLTA SERHEICRSF GQDRARESEG
1001: KKVVLFYEES LHSDQPLADS ELGEAECQEI NSADKSSLFT SLERQQLFYE CYVPNVREDS ERDEAATSEE NKAVELQVDC GIFTTPEKHL LLETDEGVKG
1101: DNITAKSHVL SDVLAADVPH SLMGDSEPDE AEKTSVEIKD VELLGESNSS TNPESPTLFG NSELDESRDS SAATCEEAFV TTSPEKELLI NPGKQEQKEV
1201: DENVVQESHV AAPDFRGNTI VDSSGGIASK VSYNHELNAG QETACAELMS KGSQAEDVVG LDATQGTSKK RRGHSPHADS VNLFDSNIEE VDTIMEAERN
1301: ISFSSYVAVP AEGNSETIGE ISSYLEVAGT CSMVFDESGS STDIQNQIND ALKEWAITDK NEADELIEAI VTKNIQKDFE GNLLLNSSGG GSNVSGETSI
1401: LAGTADEDEA AGPIAIAFVK AMSLTPDELT VKNHMNEKAA DEEMITRETT PIPEETINES SENRKEYSSI DESATLSEMQ VRREPTLIFR TQVKPTKHDM
1501: KENAPNSKIV HNLNVTAPRT SKRQPLQDLN KN
Arabidopsis Description
Uncharacterized protein F28O16.11 [Source:UniProtKB/TrEMBL;Acc:Q9SRD9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.