Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES04638 | Sorghum | plastid | 81.45 | 97.3 |
| Os02t0180200-01 | Rice | plasma membrane, plastid | 75.11 | 89.73 |
| TraesCS6B01G175800.1 | Wheat | plastid | 73.3 | 86.17 |
| TraesCS6D01G137000.1 | Wheat | plastid | 72.4 | 85.11 |
| TraesCS6A01G147700.1 | Wheat | plastid | 71.95 | 84.57 |
| AT4G30620.1 | Thale cress | plastid | 52.94 | 65.0 |
| Bra039224.1-P | Field mustard | plastid | 53.39 | 64.48 |
| CDY34804 | Canola | plastid | 53.39 | 64.48 |
| CDX76844 | Canola | plastid | 53.39 | 64.48 |
| AT2G24020.1 | Thale cress | plastid | 52.94 | 64.29 |
| Bra010280.1-P | Field mustard | plastid | 52.94 | 63.93 |
| CDY23248 | Canola | plastid | 52.49 | 63.74 |
| PGSC0003DMT400020463 | Potato | mitochondrion | 52.49 | 63.04 |
| Solyc12g009980.1.1 | Tomato | plastid | 52.49 | 63.04 |
| CDY55614 | Canola | plastid | 49.32 | 63.01 |
| GSMUA_Achr4P20470_001 | Banana | plastid | 54.3 | 62.5 |
| VIT_11s0037g00330.t01 | Wine grape | plastid | 54.75 | 61.73 |
| KRH26162 | Soybean | plastid | 54.75 | 61.73 |
| KRH55034 | Soybean | plastid | 54.3 | 61.54 |
| PGSC0003DMT400067633 | Potato | plastid | 52.04 | 59.9 |
| Solyc08g006780.2.1 | Tomato | plastid | 51.58 | 59.38 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 59.28 | 57.46 |
| Zm00001d015505_P001 | Maize | plastid | 74.66 | 55.74 |
| CDY45942 | Canola | nucleus | 29.41 | 24.9 |
| Bra008272.1-P | Field mustard | nucleus | 29.41 | 24.9 |
| CDY20394 | Canola | nucleus | 29.41 | 24.71 |
Protein Annotations
| EnsemblPlants:Zm00001d053743_P002 | EnsemblPlants:Zm00001d053743_T002 | EnsemblPlantsGene:Zm00001d053743 | EntrezGene:100273072 | Gene3D:3.30.1310.10 | InterPro:IPR036894 |
| InterPro:YbaB-like_sf | InterPro:YbaB/EbfC | PANTHER:PTHR33449 | PANTHER:PTHR33449:SF3 | ProteinID:AQK60254.1 | SUPFAM:SSF82607 |
| UniParc:UPI000842C435 | UniProt:A0A1D6QRY7 | MapMan:23.1.7.2 | : | : | : |
Description
Nucleoid-associated protein chloroplastic
Coordinates
chr4:+:240292897..240297013
Molecular Weight (calculated)
24048.0 Da
IEP (calculated)
8.310
GRAVY (calculated)
-0.184
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPSAALAPV AFRSAFSTPL ASNPTRNRIN IEGTFCLPCS ARKRASYRSF RVYSLFGGKK DKDENGDEAP SKAGIFGNMQ NLYETVKKAQ MVVQVEAVRV
101: QKELAATEID GYCEGELIKV PLGRPSIILS VTLSGNQQPI RVEITEAAME LGAEVTSTFQ FVVNQLLTST PHLLCTFQKL SELVNDAYKD AHQRSVQAMK
201: ERMSDLAQSL GMPAGLGDGL K
101: QKELAATEID GYCEGELIKV PLGRPSIILS VTLSGNQQPI RVEITEAAME LGAEVTSTFQ FVVNQLLTST PHLLCTFQKL SELVNDAYKD AHQRSVQAMK
201: ERMSDLAQSL GMPAGLGDGL K
001: MASMAATTNF TKSMLFPFSH VSGNASLNSQ RRTWPKQYKS KNGYRSLRVN GLFGGGNKDN NSEDGQSKAG IFGNMQNMYE TVKKAQMVVQ VEAVRVQKEL
101: AAAEFDGYCA GELVKVTLSG NQQPIRTDIT EAAMELGSEK LSQLVTEAYK DAHAKSVVAM KERMSDLAQS LGMPPGLSEG MK
101: AAAEFDGYCA GELVKVTLSG NQQPIRTDIT EAAMELGSEK LSQLVTEAYK DAHAKSVVAM KERMSDLAQS LGMPPGLSEG MK
Arabidopsis Description
STIC2Nucleoid-associated protein At2g24020, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82230]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.