Factsheet for Zm00001d010075_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038274_P002	Maize	plastid	80.0	83.67
Os05t0447700-01	Rice	plastid	69.33	75.21
TraesCS1D01G277900.1	Wheat	plastid	62.67	69.41
TraesCS1B01G287500.1	Wheat	plastid	62.67	68.68
TraesCS1A01G278600.1	Wheat	plastid	60.57	67.66
HORVU1Hr1G073460.2	Barley	plastid	62.67	64.26
Zm00001d012325_P001	Maize	plastid	57.71	58.72
Zm00001d042812_P001	Maize	plastid	58.29	58.51
CDY02002	Canola	cytosol, mitochondrion, nucleus	13.52	46.71
GSMUA_Achr8P02280_001	Banana	plastid	44.38	46.6
GSMUA_Achr9P03650_001	Banana	plastid	44.0	45.56
GSMUA_Achr11P...	Banana	plastid	41.71	43.89
GSMUA_Achr6P33690_001	Banana	plastid	43.43	42.7
VIT_06s0004g06290.t01	Wine grape	plastid	41.14	40.83
KRG98335	Soybean	plastid	41.14	40.6
Bra018368.1-P	Field mustard	plastid	35.62	40.04
Bra015570.1-P	Field mustard	plastid	39.05	39.88
KRH46437	Soybean	plastid	39.81	39.81
CDY06694	Canola	plastid	38.86	39.69
CDY51354	Canola	plastid	36.38	39.63
Bra039995.1-P	Field mustard	plastid	36.38	39.3
CDX97868	Canola	plastid	37.52	39.24
CDY10264	Canola	plastid	38.48	39.07
AT2G29670.2	Thale cress	plastid	39.81	38.99
CDY06247	Canola	plastid	35.81	37.98
Bra031567.1-P	Field mustard	plastid	35.81	37.98
Solyc06g076850.2.1	Tomato	plastid	39.24	37.39
AT1G07280.1	Thale cress	plastid	39.05	37.14
PGSC0003DMT400078227	Potato	plastid	39.05	37.07
CDY09927	Canola	plastid	34.67	36.77
GSMUA_Achr5P28840_001	Banana	cytosol	38.1	35.65
Bra018168.1-P	Field mustard	plastid	30.67	35.15
CDX99068	Canola	plastid	30.48	34.93
CDX86126	Canola	plastid	31.24	33.74
Bra019495.1-P	Field mustard	plastid	28.95	32.83
CDY38075	Canola	plastid	26.1	32.31
AT3G47080.1	Thale cress	plastid	31.62	32.23
CDY58299	Canola	plastid	29.52	31.96
Zm00001d032535_P002	Maize	plastid	17.33	25.49
Zm00001d013919_P001	Maize	plastid	17.52	25.34
Zm00001d046530_P001	Maize	plastid	12.95	22.9
Zm00001d003035_P001	Maize	plastid	10.48	19.78
Zm00001d030086_P001	Maize	plastid	9.33	19.68
Zm00001d027613_P002	Maize	plastid	13.33	19.66

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.2	UniProt:A0A1D6FP39	ProteinID:AQK93398.1	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR011990
InterPro:IPR013026	PFscan:PS50293	PANTHER:PTHR26312	PANTHER:PTHR26312:SF83	SUPFAM:SSF48452	InterPro:TPR-contain_dom
InterPro:TPR-like_helical_dom_sf	UniParc:UPI00084569A6	EnsemblPlantsGene:Zm00001d010075	EnsemblPlants:Zm00001d010075_P001	EnsemblPlants:Zm00001d010075_T001	SEG:seg

Description

Tetratricopeptide repeat (TPR)-like superfamily protein

Coordinates

chr8:-:98424998..98426575

Molecular Weight (calculated)

55665.5 Da

IEP (calculated)

6.327

GRAVY (calculated)

-0.209

Length

525 amino acids

Sequence
(BLAST)

001: MGFQVAAVAP SPCARSSSAS TSPSTSSRPL PAFLGGGGRG CAGLARSRSP VYWGTGVMVR PPPPARTPAR CALSASLDGM GGGDAEFMKR IEELAAAAGL
101: QLQPAGAVGC GWPASVERSA SNVGLPLSLR MMKRKRQQQL VAAARHPRWD EGLLVSAAGE SVGRAFSSMV LIVRELQSFA LQQIRDAVVC DDLQGVLARV
201: QGEMHASFVW LFQHIFAGTP ALMLSLMLLL ANFTVQSMGH SVAAAAATIP PTPPAERAEP SRSRSRFDAA SVKAFSVGRT ASVSGNDGGG GKTPPVSGAT
301: GDGRSDESSL YRPSRVTPQQ PSAPPGAETA AQYAANAAEE AIWEMMLAEA SKMQASARAE ELSDSDVLRG LVAPVETELE TEDHAEHTLT QQRYEQAVAA
401: APNNSLILAN FAQFLYLVQN DHDRSVPPKP VRRTDDAPAV VHQIAHTSLR RAEHYFERAV RAEPADSEAL SWYATFLWKA RNDLAGAEET YQEAIAADPG
501: NAHHAAAYAH FLWNTGGDDT CYPLD

Best Arabidopsis Sequence Match ( AT1G07280.2 )
(BLAST)

001: MGVKVATSST FHQWVAHPIV HHSSSLSQTL ASSAVSSPSR RRIIGNDGRS SLSCRSVMQS QRLNPSSPFG TSSTNLRHSK SCELWESTKR PKTQLIRRAF
101: SANVDPFSEE EFAKKMQELT LKFQVSNEEE DNESDTRIDD YTRKMDIVGS HNNFRSDSME PPWPEMVQMS NIERKANSVD LPLSLRIIKR KLQMEEGVLN
201: QVGESACCSV KKAFSSMVFM IRELQSFTLH MRELLLFEDL QGILHRVRKE MQASFVWLFQ QVFSATPTLM VSVMILLANF TVYSIESNSA LAAAVSPPTT
301: LSFSFETTAE ISETQETNQK FDSSMVKTFS VSSPYGKTSF VGGGGGNNIP PPVQSGTDGD GSDQFRKSQF SSSSLGATSA DSDVSVSGQE EIRLWNSILE
401: ETAKMETLDH ETMKGMVSPV EARLEAEESM DYFKTELLYQ TGLSQEPGNV LLLANYAQFL YLIIHDYDRA EKYFKRAAKA EPADAEALNK YATFLWRARN
501: DIWRAEETYL EAISADPTNS VYSANYAHFL WNTGGDETCF PLDAPSQQNN TT

Arabidopsis Description

At1g07280/F22G5_32 [Source:UniProtKB/TrEMBL;Acc:Q8VZC8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.