CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51354	Canola	plastid	89.64	93.36
CDY02002	Canola	cytosol, mitochondrion, nucleus	26.89	88.82
AT2G29670.2	Thale cress	plastid	77.29	72.39
CDY06694	Canola	plastid	61.75	60.31
CDY10264	Canola	plastid	61.95	60.15
CDY06247	Canola	plastid	56.97	57.78
CDY09927	Canola	plastid	56.77	57.58
VIT_06s0004g06290.t01	Wine grape	plastid	60.36	57.28
KRG98335	Soybean	plastid	56.77	53.57
KRH46437	Soybean	plastid	54.58	52.19
Solyc06g076850.2.1	Tomato	plastid	56.37	51.36
PGSC0003DMT400078227	Potato	plastid	56.37	51.18
CDX99068	Canola	plastid	45.62	50.0
CDX86126	Canola	plastid	46.61	48.15
CDY38075	Canola	plastid	39.44	46.7
CDY58299	Canola	plastid	44.82	46.39
GSMUA_Achr8P02280_001	Banana	plastid	45.22	45.4
GSMUA_Achr9P03650_001	Banana	plastid	44.62	44.18
TraesCS3B01G400100.1	Wheat	plastid	41.04	43.01
TraesCS1D01G277900.1	Wheat	plastid	40.44	42.83
TraesCS1B01G287500.1	Wheat	plastid	40.84	42.8
Os05t0447700-01	Rice	plastid	41.24	42.77
TraesCS3D01G361500.1	Wheat	plastid	40.84	42.71
TraesCS1A01G278600.1	Wheat	plastid	39.84	42.55
HORVU3Hr1G084970.2	Barley	plastid	40.84	42.44
TraesCS3A01G368600.1	Wheat	plastid	40.64	42.41
Os01t0855200-01	Rice	plastid	43.23	42.38
GSMUA_Achr11P...	Banana	plastid	42.03	42.28
GSMUA_Achr6P33690_001	Banana	plastid	44.82	42.13
Zm00001d012325_P001	Maize	plastid	42.43	41.28
Zm00001d042812_P001	Maize	plastid	42.23	40.54
EES01775	Sorghum	plastid	42.43	40.19
HORVU1Hr1G073460.2	Barley	plastid	40.44	39.65
KXG22120	Sorghum	plastid	39.64	39.02
Zm00001d038274_P002	Maize	plastid	38.25	38.25
Zm00001d010075_P001	Maize	plastid	39.24	37.52
GSMUA_Achr5P28840_001	Banana	cytosol	39.64	35.47
CDY60380	Canola	plastid	13.94	26.12
CDX88849	Canola	plastid	13.94	26.02
CDY44501	Canola	mitochondrion	12.55	25.93
CDX78813	Canola	mitochondrion	11.75	25.76
CDY45101	Canola	plastid	14.34	25.44
CDX75237	Canola	plastid	12.15	24.6
CDX76550	Canola	plastid	12.75	24.33
CDY08881	Canola	plastid	12.55	24.23
CDX68837	Canola	mitochondrion, plastid	11.95	24.0
CDX92483	Canola	plastid	13.35	23.93
CDY35827	Canola	plastid	13.35	23.02
CDY59180	Canola	cytosol	7.97	22.6
CDX87295	Canola	nucleus	10.56	20.95
CDY39992	Canola	nucleus	11.35	18.63
CDX89816	Canola	nucleus	10.76	18.56
CDY18241	Canola	nucleus	10.56	18.28
CDY41120	Canola	mitochondrion	10.76	17.59
CDY37568	Canola	nucleus	10.96	17.52

Protein Annotations

EnsemblPlants:CDX97868	EnsemblPlantsGene:GSBRNA2T00105202001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
ncoils:Coil	PANTHER:PTHR26312	PANTHER:PTHR26312:SF83	PFscan:PS50005	PFscan:PS50293	ProteinID:CDX97868
ProteinID:CDX97868.1	SEG:seg	SUPFAM:SSF48452	UniParc:UPI0004EC0132	MapMan:35.2	:

Description

BnaC04g40710D

Coordinates

chrLK031901:+:1139294..1143496

Molecular Weight (calculated)

56361.8 Da

IEP (calculated)

4.786

GRAVY (calculated)

-0.430

Length

502 amino acids

Sequence
(BLAST)

001: MGVKVAYTSP FLQWAAHPSS SSQTLASRAI SSPSKRRHNA PFPSCQRLNR SALFGTPTKL HRSKSCELWQ PSTPTRTHSI RRVSSASLDP FWDEEFSKKI
101: QELTLRFHDE RKQMDSIEIE MKANSVDLPL SIRMIKKKRK WEEGVKKSNA FSSMSKAFSS MVFMIRELQS FTLHMREVLF YEDLQGILLR VREEMHASFV
201: WLFQQVFSAT PTLMVYVMIL LANFTVYSIS SNSALAAAAA APPPTTTTVT ELTTEKFDSS SVVKTFFVSS PNGNTASLGG NNNGGGGGNI RPVLSGTDGD
301: DGSEQFRTSI PEGVSSTLGS TTTESEETSV SGQDELRLWN SVVEEAEQMQ FSNTDDALLD HGTRKRFVSP LDARVEEADE DIHYFRTELL YQTGLSQEPN
401: NPLLLANYAQ FLYIVSNDYD RAEEYFKRAV EVEPKDAEAL SKYATFLWRA RDDLWAAEET FLEAIDADPT NSFYAANYAN FLWNTGGDET CFPLDESQED
501: TI

Best Arabidopsis Sequence Match ( AT2G29670.2 )
(BLAST)

001: MGVKVASSST FLQWTTQPII HQSSSPSQTL ASGTITSPSK RRSTVHDGRF LSCRFVTQRL NRSALFGTPS TKLHRPKSCE LWKSSSSSSR PIKTQSFRRV
101: YSANLDPFSD EEFSKKIQEL TLRFNIPHHD DDENSIEPPW NEMVHLSSIE MKANSVDLPL SLRIIKKKRQ WEEGVKQAGE SACCSMNKAF SSMVFMIREL
201: QSFTLHMREI LFYEDLQEIL LRVREEMQQS FVWLFQQVFS ATPTLMVYVM ILLANFTVYS IGNNSSALAA VAPLPPTITE LTTVSETEET NVKFDSSVVK
301: TFFVSSPSGS IASVGGNNNG GGGNVKPVLS GTDGDGSDGS EQFRTIIPEG VSQLSSSNFG SEPSVSGQDE HRLWNSMVEE AERMQYSNID DSLDQETRKR
401: FVSHVEARVE AEEDTGYFKT ELMYQTELSQ EPNNPLLLAN YAQFLYLVSN DHDRAEEYFK RAVGVEPKDA EAFSKYATFL WRARDDLWAA EETFLEAIDA
501: DPTNSYYAAN YANFLWNTGG DDTCFPLDDE SHEDTI

Arabidopsis Description

At2g29670/T27A16.23 [Source:UniProtKB/TrEMBL;Acc:O82388]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.