Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92483 | Canola | plastid | 93.47 | 97.14 |
| Bra002280.1-P | Field mustard | plastid | 94.5 | 96.83 |
| CDY60380 | Canola | plastid | 77.66 | 84.33 |
| AT5G20190.1 | Thale cress | plastid | 83.51 | 83.79 |
| CDX88849 | Canola | plastid | 76.98 | 83.27 |
| CDY45101 | Canola | plastid | 79.04 | 81.27 |
| GSMUA_Achr2P15930_001 | Banana | cytosol | 23.02 | 55.83 |
| KRH20249 | Soybean | plastid | 43.99 | 49.81 |
| KRH03683 | Soybean | plastid | 43.3 | 48.28 |
| VIT_11s0016g05430.t01 | Wine grape | plastid | 45.02 | 45.49 |
| VIT_09s0002g06810.t01 | Wine grape | cytosol | 44.33 | 42.16 |
| CDY39992 | Canola | nucleus | 41.24 | 39.22 |
| CDX87295 | Canola | nucleus | 34.02 | 39.13 |
| Solyc07g008210.2.1 | Tomato | cytosol, nucleus, plastid | 30.93 | 39.13 |
| PGSC0003DMT400079441 | Potato | plastid | 30.93 | 38.79 |
| CDX75237 | Canola | plastid | 32.3 | 37.9 |
| HORVU7Hr1G090280.1 | Barley | mitochondrion | 37.46 | 37.85 |
| TraesCS7A01G377700.1 | Wheat | mitochondrion | 37.11 | 37.63 |
| TraesCS7D01G374500.1 | Wheat | mitochondrion | 36.43 | 37.46 |
| Os06t0606700-00 | Rice | plastid | 35.74 | 37.41 |
| CDX68837 | Canola | mitochondrion, plastid | 31.96 | 37.2 |
| CDY37568 | Canola | nucleus | 39.86 | 36.94 |
| TraesCS7B01G279400.1 | Wheat | mitochondrion | 37.11 | 36.86 |
| Zm00001d046530_P001 | Maize | plastid | 37.11 | 36.36 |
| CDY41120 | Canola | mitochondrion | 37.46 | 35.5 |
| CDX78813 | Canola | mitochondrion | 27.15 | 34.5 |
| EER88623 | Sorghum | mitochondrion | 37.46 | 34.06 |
| CDY44501 | Canola | mitochondrion | 25.77 | 30.86 |
| CDY08881 | Canola | plastid | 26.8 | 30.0 |
| CDX76550 | Canola | plastid | 26.8 | 29.66 |
| CDY02002 | Canola | cytosol, mitochondrion, nucleus | 14.09 | 26.97 |
| Os04t0496700-00 | Rice | nucleus | 17.87 | 25.24 |
| Os07t0542800-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 18.9 | 22.36 |
| CDY18241 | Canola | nucleus | 21.31 | 21.38 |
| CDX89816 | Canola | nucleus | 20.96 | 20.96 |
| CDY59180 | Canola | cytosol | 11.68 | 19.21 |
| CDY51354 | Canola | plastid | 22.68 | 13.69 |
| CDX97868 | Canola | plastid | 23.02 | 13.35 |
| CDX99068 | Canola | plastid | 19.59 | 12.45 |
| CDX86126 | Canola | plastid | 20.27 | 12.14 |
| CDY09927 | Canola | plastid | 20.62 | 12.12 |
| CDY06247 | Canola | plastid | 20.62 | 12.12 |
| CDY10264 | Canola | plastid | 20.96 | 11.8 |
| CDY06694 | Canola | plastid | 20.62 | 11.67 |
| CDY38075 | Canola | plastid | 16.15 | 11.08 |
| CDY58299 | Canola | plastid | 17.87 | 10.72 |
Protein Annotations
| EnsemblPlants:CDY35827 | EnsemblPlantsGene:GSBRNA2T00059341001 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR011990 | InterPro:IPR013026 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR26312 | PANTHER:PTHR26312:SF75 |
| PFscan:PS50293 | ProteinID:CDY35827 | ProteinID:CDY35827.1 | SEG:seg | SUPFAM:SSF48452 | UniParc:UPI0004EB5399 |
| UniProt:A0A078HDC1 | MapMan:35.2 | : | : | : | : |
Description
BnaC09g37590DBnaC09g37590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HDC1]
Coordinates
chrLK032362:-:148253..149555
Molecular Weight (calculated)
31841.7 Da
IEP (calculated)
4.311
GRAVY (calculated)
-0.573
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLRSASTPL LNSLVHASSP RESPIEAVES VHQIQRPRSL MLSSSSSCCY SPMSVHSSDE SARRMKRTAS ESDLRHLTST TKPASKFLSG GGALMEDVEE
101: GIGFGLIRTS SYDVLSWGLE EEEEEEDDTE VSGGCGGGGG VIRGGGKGDG SDGEDGDDGT DVHYRKMIEA NPGNGIFLSN YAMFLKEVRK DYLRAEEYCG
201: RAILTNPNDG NVLAMYAELV WTIHKDSSRA ESYFNRAVAA APDDCYVQAS YARFLWDADE EEEEERHEEE LEPQTSRMSF FSGPSPITAM S
101: GIGFGLIRTS SYDVLSWGLE EEEEEEDDTE VSGGCGGGGG VIRGGGKGDG SDGEDGDDGT DVHYRKMIEA NPGNGIFLSN YAMFLKEVRK DYLRAEEYCG
201: RAILTNPNDG NVLAMYAELV WTIHKDSSRA ESYFNRAVAA APDDCYVQAS YARFLWDADE EEEEERHEEE LEPQTSRMSF FSGPSPITAM S
001: MLLRSASTPL LNSLVHVSSP RDSPIETVES VHQIQRHRSI TLSASSSSCC YSPMSVHSSD DSSRRMKRTA SDSDLRHLTS TKPPVSKFLS GGALMEDVDE
101: GIGFGLIRTS SYDGISWALD EDTEVAGGGG GGMFHGGGKG RSGGRSDGGD GGDDNTDVHY RKMIEANPGN GIFLSNYAKF LKEVRKDYLK AEEYCGRAIL
201: VSPNDGNVLA MYAELVWKIH KDSSRAENYF NQAVAAAPED CYVQASYARF LWDAEEEEEE EKEERHEEEL EHQTSRMNFF TGPSPITAMS
101: GIGFGLIRTS SYDGISWALD EDTEVAGGGG GGMFHGGGKG RSGGRSDGGD GGDDNTDVHY RKMIEANPGN GIFLSNYAKF LKEVRKDYLK AEEYCGRAIL
201: VSPNDGNVLA MYAELVWKIH KDSSRAENYF NQAVAAAPED CYVQASYARF LWDAEEEEEE EKEERHEEEL EHQTSRMNFF TGPSPITAMS
Arabidopsis Description
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K464]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.