CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76550	Canola	plastid	95.38	94.3
CDX78813	Canola	mitochondrion	68.46	77.73
CDY44501	Canola	mitochondrion	72.31	77.37
AT4G17940.1	Thale cress	mitochondrion	77.31	73.36
VIT_02s0012g01590.t01	Wine grape	nucleus	45.38	54.88
KRH39558	Soybean	plastid	41.92	43.08
Solyc08g076730.2.1	Tomato	plastid	49.62	42.72
PGSC0003DMT400045174	Potato	plastid	49.23	42.38
GSMUA_Achr4P27320_001	Banana	plastid	43.08	42.26
GSMUA_Achr5P03500_001	Banana	plastid	39.23	40.96
KRH74400	Soybean	nucleus, plastid	42.31	37.8
TraesCS1A01G194200.1	Wheat	plastid	34.23	37.71
TraesCS1B01G209200.1	Wheat	plastid	33.46	36.71
Os10t0576600-01	Rice	plastid	30.77	35.24
Zm00001d030086_P001	Maize	plastid	32.69	34.14
EER91874	Sorghum	plastid	30.77	31.01
CDY60380	Canola	plastid	30.77	29.85
CDX88849	Canola	plastid	30.77	29.74
CDX68837	Canola	mitochondrion, plastid	27.69	28.8
CDX75237	Canola	plastid	27.31	28.63
CDY45101	Canola	plastid	31.15	28.62
CDX92483	Canola	plastid	30.38	28.21
CDY02002	Canola	cytosol, mitochondrion, nucleus	15.77	26.97
CDY35827	Canola	plastid	30.0	26.8
CDX87295	Canola	nucleus	25.77	26.48
CDY39992	Canola	nucleus	28.85	24.51
CDY41120	Canola	mitochondrion	26.92	22.8
CDY59180	Canola	cytosol	15.38	22.6
CDY37568	Canola	nucleus	26.92	22.29
CDY18241	Canola	nucleus	24.62	22.07
CDX89816	Canola	nucleus	23.85	21.31
HORVU1Hr1G050780.2	Barley	plastid	27.31	18.64
CDX97868	Canola	plastid	24.23	12.55
CDY06247	Canola	plastid	23.85	12.53
CDY51354	Canola	plastid	23.08	12.45
CDY09927	Canola	plastid	23.08	12.12
CDY06694	Canola	plastid	23.46	11.87
CDY10264	Canola	plastid	23.08	11.61
CDX86126	Canola	plastid	20.38	10.91
CDX99068	Canola	plastid	18.85	10.7
CDY58299	Canola	plastid	19.62	10.52
CDY38075	Canola	plastid	16.54	10.14

Protein Annotations

EnsemblPlants:CDY08881	EnsemblPlantsGene:GSBRNA2T00000873001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312	PANTHER:PTHR26312:SF53
PFscan:PS50293	ProteinID:CDY08881	ProteinID:CDY08881.1	SEG:seg	SUPFAM:SSF48452	UniParc:UPI0004EF37FE
UniProt:A0A078F653	MapMan:35.2	:	:	:	:

Description

BnaC08g11110DBnaC08g11110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F653]

Coordinates

chrLK031990:+:175951..177179

Molecular Weight (calculated)

28383.2 Da

IEP (calculated)

4.598

GRAVY (calculated)

-0.591

Length

260 amino acids

Sequence
(BLAST)

001: MTSLLMRAGS MPVQTGFIPS RKASTTISRH NSVESLPSHG GERFSGGKIS IDVKATSGLR RVLSESDVIR NERMLKSVVS KPSPANIPEE EDEIRFSDGW
101: GSLIWKESGI PAEEQGVAGG GGSGYSGGKG NGGDGYDGRS KIGDYYREML KSNPNNSLLL MNYGKFLYEV EKDAERAEEY YGRAILESPG DGEALSMYGK
201: LIWETKRDEK RARGYFDQAV NASPGDCMVM GSYAHFMWEA EDEDDEEDLM VASPAMVSAV

Best Arabidopsis Sequence Match ( AT4G17940.1 )
(BLAST)

001: MKSLLMRTGS MPVLQNRLIS GGSSRKMTPI SRTNSVESLS SYGERFAGGK ISIEVKANVG MRRVLSESDV IRSERMLKRV GSKPSPARIP EDDEAGEEEI
101: RFADGWGSMI SGGLPVEEKC FTGGGVGGGS GYSGGYGNGG GGGYEDKSKI GDYYREMLRS NPNNSLLLMN YGKFLYEVEK DAEGAEEYYG RAILENPGDG
201: EALSMYGRLI WETKRDEKRA QGYFDQAVNA SPNDCMVLGS YARFMWEAED DDDDDEEEEE EEWMAASPLM VSAV

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WUZ1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.