CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99068	Canola	plastid	87.86	93.23
AT3G47080.1	Thale cress	plastid	75.72	71.46
CDY58299	Canola	plastid	70.58	70.72
CDY38075	Canola	plastid	61.32	70.28
CDY02002	Canola	cytosol, mitochondrion, nucleus	19.75	63.16
CDY51354	Canola	plastid	46.3	46.68
CDX97868	Canola	plastid	48.15	46.61
VIT_06s0004g06290.t01	Wine grape	plastid	49.59	45.56
KRH46437	Soybean	plastid	48.15	44.57
KRG98335	Soybean	plastid	48.56	44.36
CDY10264	Canola	plastid	46.5	43.71
CDY06694	Canola	plastid	46.09	43.58
CDY06247	Canola	plastid	44.03	43.23
CDY09927	Canola	plastid	44.03	43.23
Solyc06g076850.2.1	Tomato	plastid	48.56	42.83
PGSC0003DMT400078227	Potato	plastid	47.94	42.13
GSMUA_Achr8P02280_001	Banana	plastid	36.83	35.8
TraesCS3B01G400100.1	Wheat	plastid	35.19	35.7
TraesCS3D01G361500.1	Wheat	plastid	35.19	35.62
Os05t0447700-01	Rice	plastid	35.39	35.54
GSMUA_Achr9P03650_001	Banana	plastid	36.83	35.31
HORVU3Hr1G084970.2	Barley	plastid	34.98	35.2
TraesCS3A01G368600.1	Wheat	plastid	34.77	35.14
TraesCS1D01G277900.1	Wheat	plastid	33.74	34.6
TraesCS1A01G278600.1	Wheat	plastid	33.33	34.47
TraesCS1B01G287500.1	Wheat	plastid	33.95	34.45
GSMUA_Achr11P...	Banana	plastid	34.57	33.67
Zm00001d012325_P001	Maize	plastid	35.6	33.53
GSMUA_Achr6P33690_001	Banana	plastid	36.83	33.52
Os01t0855200-01	Rice	plastid	35.19	33.4
Zm00001d042812_P001	Maize	plastid	35.39	32.89
HORVU1Hr1G073460.2	Barley	plastid	33.74	32.03
KXG22120	Sorghum	plastid	33.54	31.96
EES01775	Sorghum	plastid	34.57	31.7
Zm00001d010075_P001	Maize	plastid	33.74	31.24
Zm00001d038274_P002	Maize	plastid	32.1	31.08
GSMUA_Achr5P28840_001	Banana	cytosol	33.33	28.88
CDX75237	Canola	plastid	10.91	21.37
CDY44501	Canola	mitochondrion	10.49	20.99
CDY45101	Canola	plastid	12.14	20.85
CDX92483	Canola	plastid	11.93	20.71
CDX76550	Canola	plastid	11.11	20.53
CDX68837	Canola	mitochondrion, plastid	10.49	20.4
CDY08881	Canola	plastid	10.91	20.38
CDY35827	Canola	plastid	12.14	20.27
CDX78813	Canola	mitochondrion	9.47	20.09
CDY60380	Canola	plastid	10.7	19.4
CDX88849	Canola	plastid	10.49	18.96
CDX87295	Canola	nucleus	8.85	17.0
CDY39992	Canola	nucleus	10.7	16.99
CDY59180	Canola	cytosol	6.17	16.95
CDY41120	Canola	mitochondrion	10.29	16.29
CDY37568	Canola	nucleus	10.49	16.24
CDX89816	Canola	nucleus	9.47	15.81
CDY18241	Canola	nucleus	9.26	15.52

Protein Annotations

EnsemblPlants:CDX86126	EnsemblPlantsGene:GSBRNA2T00144176001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312	PANTHER:PTHR26312:SF87
PFscan:PS50293	ProteinID:CDX86126	ProteinID:CDX86126.1	SEG:seg	SUPFAM:SSF48452	UniParc:UPI0004EE6D63
MapMan:35.2	:	:	:	:	:

Description

BnaC03g56410D

Coordinates

chrLK031844:-:1675319..1677428

Molecular Weight (calculated)

54384.8 Da

IEP (calculated)

6.885

GRAVY (calculated)

-0.310

Length

486 amino acids

Sequence
(BLAST)

001: MDVKVASFHW SGRHAAIPHR PSLSQNLTSS KRRRSRGRGG DVSVLGGGGS LSCQTRLKAS AFFGGKLHRS KSCELLEFST KKKLYPLRRV CSASSGFFSD
101: EEFSAKMQEL ALQFKIAGEE EDLVTNKDRR NHRFGNVKLL LHESVPGLAS LEAPWMEMVS HSSIERKANS VDLPLSLRMI KRKLQEEALR EARESTYCSI
201: DKAFSSMVFM IEEMHSFALQ TREGVLKQVK KDMHASLLWM FQRVFSQTPT LMVYVMILLA NFTVHSIASN LAIAESPPGS AGTKEAGQDH MGLGHVVNGT
301: VDKMFHLSTQ GDSVLGQGIR EKELSLWNSM VEEADQMQGS PVDLDMRLRL VSPIIARVAL DDDASYTRTE LLYKIGLAQE PNNTLLLANY AQFLYLVSQD
401: YDRAEKCFKK AIESGEADAE AYSKYAIFQW KVRKDLWAAE ENFLEAISAD PTNSFYAASY ANFLWQTGGE ETCFPLESSD SPHEIA

Best Arabidopsis Sequence Match ( AT3G47080.1 )
(BLAST)

001: MEVKVATTTS FHWSGRHTAI PQCPSFSQTL TSSKRRRSRG IAGDVSVGGG SLRLKPSTFL GTQSGKLHRS KSCELWQFSN STTKKIRTDV KKKHNPLRRV
101: CSASSGFFSS DEAFSVKMQE LASQFRNAGD EEEEENKQKS EAVDNDNDSN NHRFGSLKLL QESVPGLASL EAPWAEMVNH SSIERKANSV DLPLSLRIIK
201: RKLQEEALKK ASATTYCSIN RAFSSMVFMI EELHSFALQT RVGVLKQVKK EMHASLLWIF QRVFSQTPTL MVYVMILLAN YTVHSVASNL PIAASPPVVN
301: KGPDQTQQRI DFSSLKESTK LDGSKWLGSI NFDKVSHLPR HRDSVSGEGM REEEVSLWNS MVEEADQMQD SSVDRDMRLR LVSPITARIE LDDYANYTRT
401: ELLYKIGLAQ EPDNHLLLAN YAQFLYLVTQ DHERAENCFK KAIESEDVDA ETYSKYAIFL WKVRNDLWAA EENFLEAISA DPTNSFYAAN YANFLWNTGG
501: EETCFPLEDS TQEMV

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SD65]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.