Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18241 | Canola | nucleus | 94.16 | 94.48 |
| Bra015324.1-P | Field mustard | nucleus | 99.31 | 90.6 |
| AT1G04530.1 | Thale cress | cytoskeleton, cytosol, nucleus | 79.38 | 74.52 |
| CDY59180 | Canola | cytosol | 37.46 | 61.58 |
| VIT_07s0005g04340.t01 | Wine grape | cytosol, mitochondrion, nucleus | 20.96 | 50.41 |
| KRG95736 | Soybean | cytosol, nucleus, plastid | 24.74 | 33.8 |
| HORVU5Hr1G031990.1 | Barley | nucleus | 11.68 | 28.81 |
| Os04t0510600-01 | Rice | plastid | 27.15 | 28.52 |
| GSMUA_Achr1P01000_001 | Banana | plastid | 26.46 | 28.41 |
| CDX78813 | Canola | mitochondrion | 22.34 | 28.38 |
| TraesCS2D01G363900.1 | Wheat | mitochondrion, plastid | 25.43 | 27.41 |
| CDY44501 | Canola | mitochondrion | 22.68 | 27.16 |
| TraesCS2A01G367000.1 | Wheat | plastid | 25.09 | 27.04 |
| CDX75237 | Canola | plastid | 22.68 | 26.61 |
| Zm00001d003035_P001 | Maize | plastid | 24.74 | 25.9 |
| CDY02002 | Canola | cytosol, mitochondrion, nucleus | 13.4 | 25.66 |
| CDX68837 | Canola | mitochondrion, plastid | 21.99 | 25.6 |
| CDX88849 | Canola | plastid | 22.34 | 24.16 |
| HORVU2Hr1G088520.1 | Barley | cytosol, nucleus, plastid | 24.74 | 24.16 |
| CDY08881 | Canola | plastid | 21.31 | 23.85 |
| GSMUA_Achr5P15660_001 | Banana | plastid | 23.71 | 23.79 |
| CDY60380 | Canola | plastid | 21.31 | 23.13 |
| TraesCS5A01G512000.1 | Wheat | mitochondrion, plastid | 24.74 | 22.93 |
| CDX76550 | Canola | plastid | 20.62 | 22.81 |
| EES12482 | Sorghum | nucleus | 25.77 | 22.73 |
| KRH67454 | Soybean | nucleus | 27.84 | 22.69 |
| TraesCS4B01G342900.1 | Wheat | mitochondrion | 24.05 | 22.22 |
| CDY45101 | Canola | plastid | 21.31 | 21.91 |
| Os03t0140700-01 | Rice | plastid | 25.09 | 21.53 |
| EER92881 | Sorghum | plastid | 24.74 | 21.24 |
| CDX92483 | Canola | plastid | 20.27 | 21.07 |
| CDY35827 | Canola | plastid | 20.96 | 20.96 |
| PGSC0003DMT400022129 | Potato | plastid | 25.09 | 20.28 |
| Zm00001d027613_P002 | Maize | plastid | 24.4 | 19.94 |
| Solyc09g064630.2.1 | Tomato | plastid | 24.4 | 19.89 |
| HORVU4Hr1G084230.1 | Barley | mitochondrion, plastid | 22.68 | 19.35 |
| CDY37568 | Canola | nucleus | 20.62 | 19.11 |
| CDY41120 | Canola | mitochondrion | 19.93 | 18.89 |
| CDY39992 | Canola | nucleus | 19.59 | 18.63 |
| CDX87295 | Canola | nucleus | 15.46 | 17.79 |
| CDY51354 | Canola | plastid | 17.87 | 10.79 |
| CDX97868 | Canola | plastid | 18.56 | 10.76 |
| CDY09927 | Canola | plastid | 17.87 | 10.51 |
| CDY06247 | Canola | plastid | 17.87 | 10.51 |
| CDX99068 | Canola | plastid | 16.15 | 10.26 |
| CDY06694 | Canola | plastid | 17.18 | 9.73 |
| CDY10264 | Canola | plastid | 17.18 | 9.67 |
| CDX86126 | Canola | plastid | 15.81 | 9.47 |
| CDY58299 | Canola | plastid | 14.78 | 8.87 |
| CDY38075 | Canola | plastid | 12.71 | 8.73 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.2 | GO:A0A078DKQ0 | EnsemblPlants:CDX89816 | ProteinID:CDX89816 | ProteinID:CDX89816.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00150268001 | InterPro:HAT | InterPro:IPR011990 | InterPro:IPR013026 |
| InterPro:IPR019734 | PFAM:PF13181 | PFscan:PS50293 | PANTHER:PTHR26312 | PANTHER:PTHR26312:SF89 | SMART:SM00028 |
| SMART:SM00386 | SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat | UniParc:UPI0004EE6C9B |
| SEG:seg | : | : | : | : | : |
Description
BnaA10g02660D
Coordinates
chrLK031861:+:191134..192869
Molecular Weight (calculated)
32901.7 Da
IEP (calculated)
4.045
GRAVY (calculated)
-0.648
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKSEPSLSI YCESGLNPED TVTGTDENLD RTVSIGDSVE ADFSFAKHNS SSIDALSIKE EDEIERPPSP PMHLAAGLGI DKFDLYGGEI KFDLPSLDDE
101: RCGDYYKRML EEYPLHPLLL RNYANFLEYK GDFSGAEEYY HKCTVVEPSD GVALANYGRL VMKLHQDEAK ALSYFERAVQ ASPEDSNVLG AYASFLWEIN
201: DEDDDEVDDD AFGDRTRQGK EDFEPEAGEK RSSRLSETED GETLCRYAKA FWSINGDKEK ALFYFEKAVE ASPNDSIILG EYARFLWEIE E
101: RCGDYYKRML EEYPLHPLLL RNYANFLEYK GDFSGAEEYY HKCTVVEPSD GVALANYGRL VMKLHQDEAK ALSYFERAVQ ASPEDSNVLG AYASFLWEIN
201: DEDDDEVDDD AFGDRTRQGK EDFEPEAGEK RSSRLSETED GETLCRYAKA FWSINGDKEK ALFYFEKAVE ASPNDSIILG EYARFLWEIE E
001: MLKSEASLSI YCDSGDGFKS EDPVTGIEEN LERTVTIGDA IDGGEFSFAK HKEEDSGEGE RGVFEEVIKK LGIGVRDELG FEIERPPSPP MHLAAGLGID
101: KFDLYGSEIK FDLPGYDDKN CGDYYKGMLE EYPLHPLLLK NYAKFLEYKG DLSGAEEYYH KCTVVEPSDG VALANYGRLV MKLHQDEAKA MSYFERAVQA
201: SPDDSIVLAA YASFLWEINA DDDDEDDDED DDESSGQGKD EFEADAAGKG KSSLSKTEDG ETLCRYAKAF WSINNDHEKA LFYFEKAVEA SPNDSIILGE
301: YARFLWEIDE
101: KFDLYGSEIK FDLPGYDDKN CGDYYKGMLE EYPLHPLLLK NYAKFLEYKG DLSGAEEYYH KCTVVEPSDG VALANYGRLV MKLHQDEAKA MSYFERAVQA
201: SPDDSIVLAA YASFLWEINA DDDDEDDDED DDESSGQGKD EFEADAAGKG KSSLSKTEDG ETLCRYAKAF WSINNDHEKA LFYFEKAVEA SPNDSIILGE
301: YARFLWEIDE
Arabidopsis Description
TPR4Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ31]
SUBAcon: [cytoskeleton,nucleus,cytosol]
SUBAcon: [cytoskeleton,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.