CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75237	Canola	plastid	92.0	92.74
AT4G32340.1	Thale cress	mitochondrion	75.2	78.99
GSMUA_Achr2P15930_001	Banana	cytosol	23.2	48.33
PGSC0003DMT400073455	Potato	plastid	35.6	37.24
Solyc06g068130.2.1	Tomato	plastid	34.0	35.42
CDX78813	Canola	mitochondrion	31.2	34.06
CDY60380	Canola	plastid	35.6	33.21
Os06t0606700-00	Rice	plastid	36.8	33.09
Solyc03g116670.2.1	Tomato	nucleus	41.6	33.02
CDY45101	Canola	plastid	37.2	32.86
CDX92483	Canola	plastid	36.8	32.86
CDX88849	Canola	plastid	34.8	32.34
CDY39992	Canola	nucleus	39.2	32.03
Zm00001d046530_P001	Maize	plastid	38.0	31.99
CDY35827	Canola	plastid	37.2	31.96
TraesCS7D01G374500.1	Wheat	mitochondrion	35.6	31.45
CDX87295	Canola	nucleus	31.6	31.23
TraesCS7A01G377700.1	Wheat	mitochondrion	35.6	31.01
PGSC0003DMT400001660	Potato	mitochondrion, nucleus, plastid	39.6	30.94
HORVU7Hr1G090280.1	Barley	mitochondrion	35.6	30.9
CDY37568	Canola	nucleus	38.8	30.89
CDY41120	Canola	mitochondrion	37.6	30.62
TraesCS7B01G279400.1	Wheat	mitochondrion	35.6	30.38
CDY44501	Canola	mitochondrion	29.2	30.04
EER88623	Sorghum	mitochondrion	38.4	30.0
CDY08881	Canola	plastid	28.8	27.69
CDX76550	Canola	plastid	28.0	26.62
CDY02002	Canola	cytosol, mitochondrion, nucleus	15.6	25.66
Os04t0496700-00	Rice	nucleus	19.2	23.3
CDY18241	Canola	nucleus	26.0	22.41
CDX89816	Canola	nucleus	25.6	21.99
CDY59180	Canola	cytosol	14.0	19.77
Os07t0542800-00	Rice	cytosol, mitochondrion, nucleus, plastid	19.2	19.51
CDX97868	Canola	plastid	24.0	11.95
CDY51354	Canola	plastid	22.8	11.83
CDY10264	Canola	plastid	23.2	11.22
CDY06247	Canola	plastid	22.0	11.11
CDY09927	Canola	plastid	22.0	11.11
CDY06694	Canola	plastid	22.8	11.09
CDX99068	Canola	plastid	20.0	10.92
CDX86126	Canola	plastid	20.4	10.49
CDY58299	Canola	plastid	19.2	9.9
CDY38075	Canola	plastid	16.4	9.67

Protein Annotations

EnsemblPlants:CDX68837	EnsemblPlantsGene:GSBRNA2T00130560001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312	PANTHER:PTHR26312:SF73	ProteinID:CDX68837	ProteinID:CDX68837.1
SEG:seg	SUPFAM:SSF48452	UniParc:UPI0004EDC950	MapMan:35.2	:	:

Description

BnaC01g06160D

Coordinates

chrLK031789:-:1514109..1515877

Molecular Weight (calculated)

26859.7 Da

IEP (calculated)

4.860

GRAVY (calculated)

-0.808

Length

250 amino acids

Sequence
(BLAST)

001: MILRSASSLD LNIRAAQKSP APRCANGARV ATTARPVSAS RRGCKSMPRA SSDGNLHEKR AIQSRAKTPS VNHDDASSSR VLERSRLHQG GSNGGFGGRG
101: GDGGDGGAGG HGGGGGGGGS VDGYYEEMIQ RYPGDALLLA NYARFLKEVK GDERKAEEYC ERAMLSEDGR DGEMLSMYGD LIWINHGDGA RAQSYFDQAV
201: QSSPDDCHVL ASYARFLWDT EEEGEEEEEE EESKYENGFS TYNPSVSVMS

Best Arabidopsis Sequence Match ( AT4G32340.1 )
(BLAST)

001: MIMRSASSLD LNLRAAQKPS VPRVVTTART VSAATPRVAK PITRASSDGN LYKIQSPESI TKTISVYHEE TASLRVLEGS RLPQGGSNGG FGGRGGDGAG
101: GGGGGGGGSV DGYYEEMIQR YPGDTLLLSN YARFLKEVKG DGRKAEEYCE RAMLSESGRD GELLSMYGDL IWKNHGDGVR AQSYYDQAVQ SSPDDCNVLA
201: SYARFLWDAE EEVEEEESKH HEDGFSDSTY NPSVSVVS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O49358]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.