Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- plastid 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER88623 | Sorghum | mitochondrion | 86.53 | 80.31 |
| GSMUA_Achr2P15930_001 | Banana | cytosol | 26.94 | 66.67 |
| TraesCS7A01G377700.1 | Wheat | mitochondrion | 60.27 | 62.37 |
| Os06t0606700-00 | Rice | plastid | 57.91 | 61.87 |
| TraesCS7D01G374500.1 | Wheat | mitochondrion | 58.92 | 61.84 |
| TraesCS7B01G279400.1 | Wheat | mitochondrion | 59.6 | 60.41 |
| HORVU7Hr1G090280.1 | Barley | mitochondrion | 58.25 | 60.07 |
| KRH09728 | Soybean | cytosol | 19.53 | 51.33 |
| KRH03683 | Soybean | plastid | 39.73 | 45.21 |
| KRH20249 | Soybean | plastid | 38.72 | 44.75 |
| Bra020090.1-P | Field mustard | cytosol | 27.95 | 42.78 |
| Solyc07g008210.2.1 | Tomato | cytosol, nucleus, plastid | 31.65 | 40.87 |
| AT4G32340.1 | Thale cress | mitochondrion | 32.32 | 40.34 |
| PGSC0003DMT400079441 | Potato | plastid | 30.98 | 39.66 |
| Os04t0496700-00 | Rice | nucleus | 26.94 | 38.84 |
| KRH23575 | Soybean | plastid | 33.33 | 38.52 |
| CDY60380 | Canola | plastid | 34.68 | 38.43 |
| Bra002280.1-P | Field mustard | plastid | 36.7 | 38.38 |
| CDX75237 | Canola | plastid | 31.99 | 38.31 |
| CDX92483 | Canola | plastid | 36.03 | 38.21 |
| PGSC0003DMT400001660 | Potato | mitochondrion, nucleus, plastid | 41.08 | 38.12 |
| Bra011339.1-P | Field mustard | plastid | 31.31 | 38.11 |
| CDX68837 | Canola | mitochondrion, plastid | 31.99 | 38.0 |
| AT5G20190.1 | Thale cress | plastid | 36.7 | 37.59 |
| VIT_09s0002g06810.t01 | Wine grape | cytosol | 38.72 | 37.58 |
| Solyc03g116670.2.1 | Tomato | nucleus | 39.73 | 37.46 |
| CDY45101 | Canola | plastid | 35.69 | 37.46 |
| CDY35827 | Canola | plastid | 36.36 | 37.11 |
| Bra006547.1-P | Field mustard | plastid | 34.01 | 37.0 |
| VIT_11s0016g05430.t01 | Wine grape | plastid | 35.69 | 36.81 |
| CDX88849 | Canola | plastid | 33.33 | 36.8 |
| PGSC0003DMT400073455 | Potato | plastid | 28.96 | 35.98 |
| Solyc06g068130.2.1 | Tomato | plastid | 27.95 | 34.58 |
| AT1G80130.1 | Thale cress | nucleus | 35.02 | 34.1 |
| KRH44461 | Soybean | plastid | 35.69 | 33.65 |
| Zm00001d030086_P001 | Maize | plastid | 27.27 | 32.53 |
| KRH47446 | Soybean | plastid | 34.34 | 32.38 |
| CDY39992 | Canola | nucleus | 33.0 | 32.03 |
| Bra035194.1-P | Field mustard | nucleus | 32.66 | 31.7 |
| CDX87295 | Canola | nucleus | 26.6 | 31.23 |
| Bra008495.1-P | Field mustard | mitochondrion, nucleus | 31.65 | 31.13 |
| Os07t0542800-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 25.59 | 30.89 |
| CDY41120 | Canola | mitochondrion | 30.64 | 29.64 |
| CDY37568 | Canola | nucleus | 31.31 | 29.62 |
| Zm00001d027613_P002 | Maize | plastid | 31.65 | 26.4 |
| Zm00001d003035_P001 | Maize | plastid | 23.91 | 25.54 |
| Zm00001d013919_P001 | Maize | plastid | 18.86 | 15.43 |
| Zm00001d032535_P002 | Maize | plastid | 18.52 | 15.41 |
| Zm00001d038274_P002 | Maize | plastid | 22.56 | 13.35 |
| Zm00001d042812_P001 | Maize | plastid | 22.9 | 13.0 |
| Zm00001d012325_P001 | Maize | plastid | 22.56 | 12.98 |
| Zm00001d010075_P001 | Maize | plastid | 22.9 | 12.95 |
Protein Annotations
| EMBL:BT066960 | EnsemblPlants:Zm00001d046530_P001 | EnsemblPlants:Zm00001d046530_T001 | EnsemblPlantsGene:Zm00001d046530 | EntrezGene:100383344 | Gene3D:1.25.40.10 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:TPR-contain_dom |
| InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR26312 | PANTHER:PTHR26312:SF75 | PFscan:PS50293 | ProteinID:AQL04436.1 | SEG:seg |
| SUPFAM:SSF48452 | UniParc:UPI000195CB63 | UniProt:C0PF91 | MapMan:35.2 | : | : |
Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Coordinates
chr9:+:94210411..94211858
Molecular Weight (calculated)
30366.2 Da
IEP (calculated)
4.206
GRAVY (calculated)
-0.128
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLRSASSPL LNCGRAPAAA ASVEHLAVVS PLLSPAVAAP RHGPVLCRAM SEGDLAAPLV PKKDDGHGRA PRLSLSASLS SSASIFVEEE DGEGEEEEDL
101: VAVAGAGVDV PLPLRRLLTN TGLDVSAAAA LAFVEQGVGG SGGGGKACGS SGGKGGIGDG DGGSNRAATD AHYRQMIEAD PGNSLLLVNY ARFLKEVAGD
201: AARAQEYCER AILASPGDAE ALSLYAGLVW ETSRDAGRAE DYYSRAVQAA PDDCYVLGSY AGFLWDAEED EEENSEPLPP PSLFQGAAQR PSITAAS
101: VAVAGAGVDV PLPLRRLLTN TGLDVSAAAA LAFVEQGVGG SGGGGKACGS SGGKGGIGDG DGGSNRAATD AHYRQMIEAD PGNSLLLVNY ARFLKEVAGD
201: AARAQEYCER AILASPGDAE ALSLYAGLVW ETSRDAGRAE DYYSRAVQAA PDDCYVLGSY AGFLWDAEED EEENSEPLPP PSLFQGAAQR PSITAAS
001: MLLRSASTPL LNSLVHVSSP RDSPIETVES VHQIQRHRSI TLSASSSSCC YSPMSVHSSD DSSRRMKRTA SDSDLRHLTS TKPPVSKFLS GGALMEDVDE
101: GIGFGLIRTS SYDGISWALD EDTEVAGGGG GGMFHGGGKG RSGGRSDGGD GGDDNTDVHY RKMIEANPGN GIFLSNYAKF LKEVRKDYLK AEEYCGRAIL
201: VSPNDGNVLA MYAELVWKIH KDSSRAENYF NQAVAAAPED CYVQASYARF LWDAEEEEEE EKEERHEEEL EHQTSRMNFF TGPSPITAMS
101: GIGFGLIRTS SYDGISWALD EDTEVAGGGG GGMFHGGGKG RSGGRSDGGD GGDDNTDVHY RKMIEANPGN GIFLSNYAKF LKEVRKDYLK AEEYCGRAIL
201: VSPNDGNVLA MYAELVWKIH KDSSRAENYF NQAVAAAPED CYVQASYARF LWDAEEEEEE EKEERHEEEL EHQTSRMNFF TGPSPITAMS
Arabidopsis Description
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K464]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.