Factsheet for Os06t0606700-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
cytosol 1
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P15930_001	Banana	cytosol	28.42	65.83
TraesCS7D01G374500.1	Wheat	mitochondrion	65.11	63.96
HORVU7Hr1G090280.1	Barley	mitochondrion	65.83	63.54
TraesCS7A01G377700.1	Wheat	mitochondrion	65.11	63.07
TraesCS7B01G279400.1	Wheat	mitochondrion	66.19	62.8
Os04t0496700-00	Rice	nucleus	43.53	58.74
Zm00001d046530_P001	Maize	plastid	61.87	57.91
EER88623	Sorghum	mitochondrion	63.31	55.0
KRH09728	Soybean	cytosol	19.78	48.67
Bra020090.1-P	Field mustard	cytosol	30.22	43.3
KRH20249	Soybean	plastid	39.57	42.8
KRH03683	Soybean	plastid	39.93	42.53
Os07t0542800-00	Rice	cytosol, mitochondrion, nucleus, plastid	35.61	40.24
Os10t0576600-01	Rice	plastid	32.73	40.09
Solyc07g008210.2.1	Tomato	cytosol, nucleus, plastid	32.37	39.13
PGSC0003DMT400079441	Potato	plastid	32.01	38.36
AT4G32340.1	Thale cress	mitochondrion	32.73	38.24
CDY60380	Canola	plastid	36.33	37.69
CDX92483	Canola	plastid	37.77	37.5
CDX75237	Canola	plastid	33.45	37.5
CDY45101	Canola	plastid	38.13	37.46
KRH23575	Soybean	plastid	34.53	37.35
PGSC0003DMT400073455	Potato	plastid	32.01	37.24
Bra002280.1-P	Field mustard	plastid	37.77	36.97
Bra011339.1-P	Field mustard	plastid	32.37	36.89
CDX88849	Canola	plastid	35.61	36.8
CDX68837	Canola	mitochondrion, plastid	33.09	36.8
VIT_09s0002g06810.t01	Wine grape	cytosol	39.93	36.27
Bra006547.1-P	Field mustard	plastid	35.61	36.26
VIT_11s0016g05430.t01	Wine grape	plastid	37.41	36.11
CDY35827	Canola	plastid	37.41	35.74
PGSC0003DMT400001660	Potato	mitochondrion, nucleus, plastid	41.01	35.62
Solyc06g068130.2.1	Tomato	plastid	30.58	35.42
Solyc03g116670.2.1	Tomato	nucleus	39.57	34.92
AT5G20190.1	Thale cress	plastid	36.33	34.83
KRH47446	Soybean	plastid	37.41	33.02
KRH44461	Soybean	plastid	36.69	32.38
AT1G80130.1	Thale cress	nucleus	34.89	31.8
CDY39992	Canola	nucleus	34.17	31.05
Bra035194.1-P	Field mustard	nucleus	33.81	30.72
CDX87295	Canola	nucleus	27.7	30.43
Bra008495.1-P	Field mustard	mitochondrion, nucleus	31.65	29.14
Os04t0510600-01	Rice	plastid	28.06	28.16
CDY37568	Canola	nucleus	31.3	27.71
CDY41120	Canola	mitochondrion	30.58	27.69
Os03t0140700-01	Rice	plastid	29.86	24.48
Os10t0501900-01	Rice	plastid	19.42	14.88
Os05t0447700-01	Rice	plastid	23.38	13.43
Os01t0855200-01	Rice	plastid	23.74	12.89
Os08t0382600-00	Rice	mitochondrion	5.04	8.0

Protein Annotations

EnsemblPlants:Os06t0606700-00	EnsemblPlantsGene:Os06g0606700	EntrezGene:4341478	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312
PANTHER:PTHR26312:SF75	PFscan:PS50293	ProteinID:BAD36110.1	ProteinID:BAS98534.1	RefSeq:XP_015643563.1	SEG:seg
SUPFAM:SSF48452	UniParc:UPI00004039A9	UniProt:Q69Q43	MapMan:35.2	:	:

Description

Tetratricopeptide-like helical domain containing protein. (Os06t0606700-00)

Coordinates

chr6:+:24089944..24091422

Molecular Weight (calculated)

28586.0 Da

IEP (calculated)

4.246

GRAVY (calculated)

-0.289

Length

278 amino acids

Sequence
(BLAST)

001: MLLRSASSPL LGHAACASAA EHVGAVVVVV PVSPAAARQR GPPLCRATSE GDLMAAVSAR PRALSVASSA SISVEEEVEE EEEEEEDVLG AAVPLRRLLT
101: STGLDADTGR GREGDAAVVE EGVGGGGGGR KVCNGGGGGS GGKGDGGRRD ADAHYRRMIQ ADPANPLLLG NYARFLKEVE GDAARAQEYC ERAIVANPGD
201: GDALALYAGL VWETTRDADR ADAYFTRAVH AAPDDCYVLG SYAGFLWDAE EDDDDHGGEQ PPPPFMGAAQ PPSITAAS

Best Arabidopsis Sequence Match ( AT5G20190.1 )
(BLAST)

001: MLLRSASTPL LNSLVHVSSP RDSPIETVES VHQIQRHRSI TLSASSSSCC YSPMSVHSSD DSSRRMKRTA SDSDLRHLTS TKPPVSKFLS GGALMEDVDE
101: GIGFGLIRTS SYDGISWALD EDTEVAGGGG GGMFHGGGKG RSGGRSDGGD GGDDNTDVHY RKMIEANPGN GIFLSNYAKF LKEVRKDYLK AEEYCGRAIL
201: VSPNDGNVLA MYAELVWKIH KDSSRAENYF NQAVAAAPED CYVQASYARF LWDAEEEEEE EKEERHEEEL EHQTSRMNFF TGPSPITAMS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K464]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.