Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87295 | Canola | nucleus | 80.07 | 96.84 |
| CDY37568 | Canola | nucleus | 78.76 | 76.75 |
| CDY41120 | Canola | mitochondrion | 75.49 | 75.24 |
| AT1G80130.1 | Thale cress | nucleus | 73.86 | 74.1 |
| GSMUA_Achr2P15930_001 | Banana | cytosol | 19.28 | 49.17 |
| KRH09728 | Soybean | cytosol | 16.01 | 43.36 |
| CDX92483 | Canola | plastid | 38.89 | 42.5 |
| KRH23575 | Soybean | plastid | 34.64 | 41.25 |
| CDY35827 | Canola | plastid | 39.22 | 41.24 |
| CDY60380 | Canola | plastid | 35.95 | 41.04 |
| CDX88849 | Canola | plastid | 35.29 | 40.15 |
| CDX75237 | Canola | plastid | 32.35 | 39.92 |
| CDY45101 | Canola | plastid | 36.6 | 39.58 |
| CDX68837 | Canola | mitochondrion, plastid | 32.03 | 39.2 |
| PGSC0003DMT400073455 | Potato | plastid | 30.07 | 38.49 |
| Solyc06g068130.2.1 | Tomato | plastid | 29.41 | 37.5 |
| PGSC0003DMT400001660 | Potato | mitochondrion, nucleus, plastid | 38.24 | 36.56 |
| KRH47446 | Soybean | plastid | 37.58 | 36.51 |
| KRH44461 | Soybean | plastid | 37.25 | 36.19 |
| Solyc03g116670.2.1 | Tomato | nucleus | 36.6 | 35.56 |
| HORVU7Hr1G090280.1 | Barley | mitochondrion | 33.01 | 35.07 |
| Os06t0606700-00 | Rice | plastid | 31.05 | 34.17 |
| TraesCS7A01G377700.1 | Wheat | mitochondrion | 31.7 | 33.8 |
| TraesCS7D01G374500.1 | Wheat | mitochondrion | 31.05 | 33.57 |
| TraesCS7B01G279400.1 | Wheat | mitochondrion | 32.03 | 33.45 |
| Zm00001d046530_P001 | Maize | plastid | 32.03 | 33.0 |
| CDX78813 | Canola | mitochondrion | 23.53 | 31.44 |
| EER88623 | Sorghum | mitochondrion | 31.7 | 30.31 |
| CDY44501 | Canola | mitochondrion | 23.2 | 29.22 |
| CDY08881 | Canola | plastid | 24.51 | 28.85 |
| CDX76550 | Canola | plastid | 23.86 | 27.76 |
| Os04t0496700-00 | Rice | nucleus | 16.01 | 23.79 |
| CDY02002 | Canola | cytosol, mitochondrion, nucleus | 11.11 | 22.37 |
| CDX89816 | Canola | nucleus | 18.63 | 19.59 |
| Os07t0542800-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 15.69 | 19.51 |
| CDY18241 | Canola | nucleus | 18.3 | 19.31 |
| CDY59180 | Canola | cytosol | 10.46 | 18.08 |
| CDX97868 | Canola | plastid | 18.63 | 11.35 |
| CDY09927 | Canola | plastid | 18.3 | 11.31 |
| CDY51354 | Canola | plastid | 17.65 | 11.2 |
| CDY06694 | Canola | plastid | 18.63 | 11.09 |
| CDY10264 | Canola | plastid | 18.63 | 11.03 |
| CDY06247 | Canola | plastid | 17.65 | 10.91 |
| CDX86126 | Canola | plastid | 16.99 | 10.7 |
| CDX99068 | Canola | plastid | 16.01 | 10.7 |
| CDY38075 | Canola | plastid | 13.07 | 9.43 |
| CDY58299 | Canola | plastid | 13.73 | 8.66 |
Protein Annotations
| EnsemblPlants:CDY39992 | EnsemblPlantsGene:GSBRNA2T00068884001 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR011990 | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR26312 | PANTHER:PTHR26312:SF75 | ProteinID:CDY39992 | ProteinID:CDY39992.1 |
| SEG:seg | SUPFAM:SSF48452 | UniParc:UPI0004EB182A | UniProt:A0A078HQ89 | MapMan:35.2 | : |
Description
BnaC06g40700DBnaC06g40700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQ89]
Coordinates
chrLK032461:+:287386..288946
Molecular Weight (calculated)
33777.8 Da
IEP (calculated)
4.777
GRAVY (calculated)
-0.758
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLRSTSAPI LNSWLPQHCS RESSPEPESQ LQRRNRSLSI LSSKSIDRHT GELLHQTLSV HKESVHKSSN KENDSNDVIS RRQRRSSLDE SSHGTAYRKK
101: ILDPSSTFLM ERLFSSSGQG EKVCDDDDDG LETLVSGGSG MGSSGGKICT GGGVGGSGVD GGGSEDATDV YYREMINLNP GNSILTGNYA KFLKEVRGDM
201: KRAEEYCERV ILGNTNDGNV LSLYADLILH NHGDRKRAHS YFQQAAQMSP DDCYVQASYA RFLWDVEEDE DEVDGEEEQR SDEIGIMPST TTFRDFSQLS
301: AISTQS
101: ILDPSSTFLM ERLFSSSGQG EKVCDDDDDG LETLVSGGSG MGSSGGKICT GGGVGGSGVD GGGSEDATDV YYREMINLNP GNSILTGNYA KFLKEVRGDM
201: KRAEEYCERV ILGNTNDGNV LSLYADLILH NHGDRKRAHS YFQQAAQMSP DDCYVQASYA RFLWDVEEDE DEVDGEEEQR SDEIGIMPST TTFRDFSQLS
301: AISTQS
001: MLLRSTSAPI LNSWLPQHCS RESSPEPESQ LWRRSTSLSL FSSKSIDGHT GEQLHQALSD NKEIIILKSK SNEHSYKTPT SSRQRRSSLD ETRYTKKTLD
101: RSSPFLVERL FSSSGQGDKA SSNDRLETLV SGGGGGMGGS GGNICNGGGG VGGSGVDGGR SEDATDTYYR EMIDSNPGNS LLTGNYAKFL KEVKGDMKKA
201: EEYCERAILG NTNDGNVLSL YADLILHNHQ DRQRAHSYYK QAVKMSPEDC YVQASYARFL WDVDEDEEDE ALGEEEENLS DETGHVPPTT MFRDFPQHTS
301: ITASS
101: RSSPFLVERL FSSSGQGDKA SSNDRLETLV SGGGGGMGGS GGNICNGGGG VGGSGVDGGR SEDATDTYYR EMIDSNPGNS LLTGNYAKFL KEVKGDMKKA
201: EEYCERAILG NTNDGNVLSL YADLILHNHQ DRQRAHSYYK QAVKMSPEDC YVQASYARFL WDVDEDEEDE ALGEEEENLS DETGHVPPTT MFRDFPQHTS
301: ITASS
Arabidopsis Description
F18B13.21 protein [Source:UniProtKB/TrEMBL;Acc:Q9SSC6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.