Factsheet for Solyc03g116670.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 2
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001660	Potato	mitochondrion, nucleus, plastid	92.06	90.62
GSMUA_Achr2P15930_001	Banana	cytosol	20.32	53.33
KRH09728	Soybean	cytosol	18.1	50.44
Solyc06g068130.2.1	Tomato	plastid	34.92	45.83
KRH23575	Soybean	plastid	36.83	45.14
Solyc07g008210.2.1	Tomato	cytosol, nucleus, plastid	31.43	43.04
AT4G32340.1	Thale cress	mitochondrion	31.75	42.02
CDX68837	Canola	mitochondrion, plastid	33.02	41.6
CDX75237	Canola	plastid	32.38	41.13
Bra011339.1-P	Field mustard	plastid	31.43	40.57
AT1G80130.1	Thale cress	nucleus	39.05	40.33
TraesCS7D01G374500.1	Wheat	mitochondrion	35.87	39.93
Zm00001d046530_P001	Maize	plastid	37.46	39.73
Os06t0606700-00	Rice	plastid	34.92	39.57
TraesCS7A01G377700.1	Wheat	mitochondrion	35.87	39.37
HORVU7Hr1G090280.1	Barley	mitochondrion	35.56	38.89
CDX87295	Canola	nucleus	30.48	37.94
KRH44461	Soybean	plastid	37.78	37.78
TraesCS7B01G279400.1	Wheat	mitochondrion	34.92	37.54
CDY39992	Canola	nucleus	35.56	36.6
EER88623	Sorghum	mitochondrion	37.14	36.56
Bra035194.1-P	Field mustard	nucleus	35.24	36.27
KRH47446	Soybean	plastid	35.87	35.87
Bra008495.1-P	Field mustard	mitochondrion, nucleus	34.29	35.76
CDY37568	Canola	nucleus	34.92	35.03
CDY41120	Canola	mitochondrion	33.97	34.85
Os04t0496700-00	Rice	nucleus	20.95	32.04
Os07t0542800-00	Rice	cytosol, mitochondrion, nucleus, plastid	21.27	27.24
Solyc08g076730.2.1	Tomato	plastid	26.03	27.15
Solyc09g064630.2.1	Tomato	plastid	27.62	24.37
Solyc09g090930.2.1	Tomato	nucleus	17.14	13.57
Solyc05g052700.2.1	Tomato	extracellular	19.37	13.53
Solyc03g005710.1.1	Tomato	cytosol	14.92	12.43
Solyc06g076850.2.1	Tomato	plastid	20.0	11.43

Protein Annotations

EnsemblPlants:Solyc03g116670.2.1	EnsemblPlantsGene:Solyc03g116670.2	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312	PANTHER:PTHR26312:SF75
PFscan:PS50293	SEG:seg	SUPFAM:SSF48452	UniParc:UPI0002768F31	UniProt:K4BLG9	MapMan:35.2

Description

No Description!

Coordinates

chr3:+:65983496..65985772

Molecular Weight (calculated)

33924.3 Da

IEP (calculated)

5.257

GRAVY (calculated)

-0.723

Length

315 amino acids

Sequence
(BLAST)

001: MLLRSSSTPL LNSWKPKSCG SSPESDLLPI TTQQLNRTRS VLMSTTFGPD ESPAKHTSPT KHAPYGCMCE LDPRDPAVPK KNKNGTKREA KMPNLKNNEL
101: GSTEVRRLLS NSGLGNAEEE ASVAVEEKGR VLQSLVAGGV GGGGGGKSCG GGGSHGGDGS DPQDSNSWHG PDSIDAYYQK MIQANPGNGL LLANYARFLK
201: EVKADLEKAE EYCGRAILAN PNDGNALSLY GELIWQTQKD AARARTYFDR AVKSDPDDCH VLASYARFLW DAGEEDENEG EEDELRQFII QHENSASAQN
301: FFGAPSHRPP LTAAS

Best Arabidopsis Sequence Match ( AT1G80130.1 )
(BLAST)

001: MLLRSTSAPI LNSWLPQHCS RESSPEPESQ LWRRSTSLSL FSSKSIDGHT GEQLHQALSD NKEIIILKSK SNEHSYKTPT SSRQRRSSLD ETRYTKKTLD
101: RSSPFLVERL FSSSGQGDKA SSNDRLETLV SGGGGGMGGS GGNICNGGGG VGGSGVDGGR SEDATDTYYR EMIDSNPGNS LLTGNYAKFL KEVKGDMKKA
201: EEYCERAILG NTNDGNVLSL YADLILHNHQ DRQRAHSYYK QAVKMSPEDC YVQASYARFL WDVDEDEEDE ALGEEEENLS DETGHVPPTT MFRDFPQHTS
301: ITASS

Arabidopsis Description

F18B13.21 protein [Source:UniProtKB/TrEMBL;Acc:Q9SSC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.