Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| extracellular:
29876421
|
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400069757 | Potato | plastid | 91.35 | 92.17 |
| VIT_13s0067g00240.t01 | Wine grape | cytosol | 37.03 | 41.85 |
| KRH73162 | Soybean | mitochondrion | 36.14 | 33.82 |
| Solyc06g076850.2.1 | Tomato | plastid | 41.24 | 33.76 |
| KRH14978 | Soybean | cytosol, plastid | 35.03 | 33.12 |
| Os08t0382600-00 | Rice | mitochondrion | 11.53 | 29.71 |
| Solyc03g116670.2.1 | Tomato | nucleus | 13.53 | 19.37 |
| Solyc07g008210.2.1 | Tomato | cytosol, nucleus, plastid | 9.76 | 19.13 |
| Solyc06g068130.2.1 | Tomato | plastid | 9.98 | 18.75 |
| Solyc08g076730.2.1 | Tomato | plastid | 12.2 | 18.21 |
| HORVU1Hr1G073400.1 | Barley | endoplasmic reticulum | 12.64 | 17.81 |
| Solyc09g064630.2.1 | Tomato | plastid | 12.2 | 15.41 |
| Solyc09g090930.2.1 | Tomato | nucleus | 9.31 | 10.55 |
| Solyc03g005710.1.1 | Tomato | cytosol | 8.65 | 10.32 |
Protein Annotations
| EnsemblPlants:Solyc05g052700.2.1 | EnsemblPlantsGene:Solyc05g052700.2 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR011990 | InterPro:IPR013026 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR26312 | PANTHER:PTHR26312:SF87 |
| PFscan:PS50293 | SEG:seg | SUPFAM:SSF48452 | UniParc:UPI0002765F0F | UniProt:K4C1V1 | MapMan:35.2 |
Description
No Description!
Coordinates
chr5:+:62905342..62908461
Molecular Weight (calculated)
51755.2 Da
IEP (calculated)
4.770
GRAVY (calculated)
-0.455
Length
451 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLQNSLLLQ SSSPSTLSFL NSSPKSNKWG HKNPNFICKL VLFSPKSLGS QYFEKNESKG HSRSIQPCCC SSRFDEEKFD GEGIERGENE GSCAIFGSKD
101: SIFPSKFESL EPSLFGIEAE PEAPYWPERE EVLWAHIEQK AKSFGLPLSL RMMQKKHQWE SCRFKDLKVT NSCTSKALNS LVFIIVELQT YALHMRESIC
201: NEDLEMIIDK VQRDMYASFV CLFRQVFSQT PMLMMEVMTL LANFSVYSAS GENCDQPYLK VHYPDIVPQD VSKVVWTDEE KELWDSIQDE ALNMRGGSRG
301: IDFDNEVMSK FVSPLSVEIE PDNSVDYYKT DLVYQMNLTH EPNNTLLLCN YANFLKVFVR DNNRAEECFK RAVQVEPPDA EALCQYAIFL WKVKNDLWGA
401: EEKYQQAVAA EPRNPYYRCT YANFLWNTGG EETCFLPSST SSINNKKGEE V
101: SIFPSKFESL EPSLFGIEAE PEAPYWPERE EVLWAHIEQK AKSFGLPLSL RMMQKKHQWE SCRFKDLKVT NSCTSKALNS LVFIIVELQT YALHMRESIC
201: NEDLEMIIDK VQRDMYASFV CLFRQVFSQT PMLMMEVMTL LANFSVYSAS GENCDQPYLK VHYPDIVPQD VSKVVWTDEE KELWDSIQDE ALNMRGGSRG
301: IDFDNEVMSK FVSPLSVEIE PDNSVDYYKT DLVYQMNLTH EPNNTLLLCN YANFLKVFVR DNNRAEECFK RAVQVEPPDA EALCQYAIFL WKVKNDLWGA
401: EEKYQQAVAA EPRNPYYRCT YANFLWNTGG EETCFLPSST SSINNKKGEE V
001: MEVKVATTTS FHWSGRHTAI PQCPSFSQTL TSSKRRRSRG IAGDVSVGGG SLRLKPSTFL GTQSGKLHRS KSCELWQFSN STTKKIRTDV KKKHNPLRRV
101: CSASSGFFSS DEAFSVKMQE LASQFRNAGD EEEEENKQKS EAVDNDNDSN NHRFGSLKLL QESVPGLASL EAPWAEMVNH SSIERKANSV DLPLSLRIIK
201: RKLQEEALKK ASATTYCSIN RAFSSMVFMI EELHSFALQT RVGVLKQVKK EMHASLLWIF QRVFSQTPTL MVYVMILLAN YTVHSVASNL PIAASPPVVN
301: KGPDQTQQRI DFSSLKESTK LDGSKWLGSI NFDKVSHLPR HRDSVSGEGM REEEVSLWNS MVEEADQMQD SSVDRDMRLR LVSPITARIE LDDYANYTRT
401: ELLYKIGLAQ EPDNHLLLAN YAQFLYLVTQ DHERAENCFK KAIESEDVDA ETYSKYAIFL WKVRNDLWAA EENFLEAISA DPTNSFYAAN YANFLWNTGG
501: EETCFPLEDS TQEMV
101: CSASSGFFSS DEAFSVKMQE LASQFRNAGD EEEEENKQKS EAVDNDNDSN NHRFGSLKLL QESVPGLASL EAPWAEMVNH SSIERKANSV DLPLSLRIIK
201: RKLQEEALKK ASATTYCSIN RAFSSMVFMI EELHSFALQT RVGVLKQVKK EMHASLLWIF QRVFSQTPTL MVYVMILLAN YTVHSVASNL PIAASPPVVN
301: KGPDQTQQRI DFSSLKESTK LDGSKWLGSI NFDKVSHLPR HRDSVSGEGM REEEVSLWNS MVEEADQMQD SSVDRDMRLR LVSPITARIE LDDYANYTRT
401: ELLYKIGLAQ EPDNHLLLAN YAQFLYLVTQ DHERAENCFK KAIESEDVDA ETYSKYAIFL WKVRNDLWAA EENFLEAISA DPTNSFYAAN YANFLWNTGG
501: EETCFPLEDS TQEMV
Arabidopsis Description
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SD65]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.