Factsheet for Solyc09g064630.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022129	Potato	plastid	93.28	92.5
VIT_07s0005g04340.t01	Wine grape	cytosol, mitochondrion, nucleus	20.73	61.16
KRG95736	Soybean	cytosol, nucleus, plastid	29.41	49.3
GSMUA_Achr1P01000_001	Banana	plastid	35.85	47.23
KRH67454	Soybean	nucleus	44.54	44.54
GSMUA_Achr5P15660_001	Banana	plastid	34.73	42.76
TraesCS5A01G512000.1	Wheat	mitochondrion, plastid	36.69	41.72
TraesCS4B01G342900.1	Wheat	mitochondrion	35.57	40.32
HORVU5Hr1G031990.1	Barley	nucleus	13.17	39.83
TraesCS2A01G367000.1	Wheat	plastid	29.69	39.26
Os04t0510600-01	Rice	plastid	30.25	38.99
TraesCS2D01G363900.1	Wheat	mitochondrion, plastid	29.41	38.89
Os03t0140700-01	Rice	plastid	35.57	37.46
HORVU4Hr1G084230.1	Barley	mitochondrion, plastid	35.29	36.95
EER92881	Sorghum	plastid	35.01	36.87
Zm00001d027613_P002	Maize	plastid	36.69	36.8
HORVU2Hr1G088520.1	Barley	cytosol, nucleus, plastid	29.69	35.57
Zm00001d003035_P001	Maize	plastid	27.17	34.89
EES12482	Sorghum	nucleus	29.13	31.52
Solyc07g008210.2.1	Tomato	cytosol, nucleus, plastid	20.17	31.3
Solyc06g068130.2.1	Tomato	plastid	19.61	29.17
Solyc03g116670.2.1	Tomato	nucleus	24.37	27.62
Solyc08g076730.2.1	Tomato	plastid	22.13	26.16
CDY18241	Canola	nucleus	20.45	25.17
CDX89816	Canola	nucleus	19.89	24.4
CDY59180	Canola	cytosol	12.04	24.29
AT1G04530.1	Thale cress	cytoskeleton, cytosol, nucleus	20.17	23.23
Bra015324.1-P	Field mustard	nucleus	19.89	22.26
Solyc09g090930.2.1	Tomato	nucleus	22.41	20.1
Solyc03g005710.1.1	Tomato	cytosol	16.81	15.87
Solyc05g052700.2.1	Tomato	extracellular	15.41	12.2
Solyc06g076850.2.1	Tomato	plastid	17.65	11.43

Protein Annotations

EnsemblPlants:Solyc09g064630.2.1	EnsemblPlantsGene:Solyc09g064630.2	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR26312
PANTHER:PTHR26312:SF89	PFscan:PS50293	SEG:seg	SUPFAM:SSF48452	UniParc:UPI000276C13D	UniProt:K4CU91
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr9:+:61954061..61956172

Molecular Weight (calculated)

39689.5 Da

IEP (calculated)

5.133

GRAVY (calculated)

-0.688

Length

357 amino acids

Sequence
(BLAST)

001: MLLRSSSTPL LGSLHSESPN SHHHHHQSDL TPNHTPNSVH HSYSKLSCSH GGYQNFNRSL YPCKSPISPS FSEISNANKF PSHGFRRAQS EGNLEGLVKV
101: STDEVVDEFT LSKPTNMLSR KPPKSFLETI PSFSIHNSRE LHSDDDDSDD FDCISGQNSL GMNTVKEEMS HVSRNSKIDI VEGREEMFLA RGLGVADSGC
201: FDDGGCGIGG GGGGVYRPVA FDRDGGDSQG LHIEEHYKKM IEENPGNSLF LRNYANFLYE TKRDLKGAEE YYSRAILADP CDGEILSQYA KLIWELHHDT
301: DRATSYFERA VQTASSNSHI HAAYANFLWE IEDEEDENDE TQTQPMVHTV ATASITV

Best Arabidopsis Sequence Match ( AT4G17940.1 )
(BLAST)

001: MKSLLMRTGS MPVLQNRLIS GGSSRKMTPI SRTNSVESLS SYGERFAGGK ISIEVKANVG MRRVLSESDV IRSERMLKRV GSKPSPARIP EDDEAGEEEI
101: RFADGWGSMI SGGLPVEEKC FTGGGVGGGS GYSGGYGNGG GGGYEDKSKI GDYYREMLRS NPNNSLLLMN YGKFLYEVEK DAEGAEEYYG RAILENPGDG
201: EALSMYGRLI WETKRDEKRA QGYFDQAVNA SPNDCMVLGS YARFMWEAED DDDDDEEEEE EEWMAASPLM VSAV

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WUZ1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.