Factsheet for TraesCS2A01G367000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G363900.1	Wheat	mitochondrion, plastid	94.44	94.44
HORVU2Hr1G088520.1	Barley	cytosol, nucleus, plastid	90.0	81.54
Os04t0510600-01	Rice	plastid	69.26	67.51
Zm00001d003035_P001	Maize	plastid	62.96	61.15
EES12482	Sorghum	nucleus	67.78	55.45
VIT_07s0005g04340.t01	Wine grape	cytosol, mitochondrion, nucleus	24.81	55.37
GSMUA_Achr1P01000_001	Banana	plastid	40.74	40.59
KRG95736	Soybean	cytosol, nucleus, plastid	28.89	36.62
GSMUA_Achr5P15660_001	Banana	plastid	38.52	35.86
TraesCS5A01G512000.1	Wheat	mitochondrion, plastid	40.74	35.03
PGSC0003DMT400022129	Potato	plastid	40.0	30.0
Solyc09g064630.2.1	Tomato	plastid	39.26	29.69
KRH67454	Soybean	nucleus	37.04	28.01
TraesCS7A01G377700.1	Wheat	mitochondrion	28.89	27.18
TraesCS1A01G194200.1	Wheat	plastid	23.7	27.12
CDX89816	Canola	nucleus	27.04	25.09
CDY18241	Canola	nucleus	26.67	24.83
Bra015324.1-P	Field mustard	nucleus	27.04	22.88
AT1G04530.1	Thale cress	cytoskeleton, cytosol, nucleus	25.93	22.58
KRG92250	Soybean	cytosol	31.11	21.71
KRH34549	Soybean	nucleus	31.11	21.48
CDY59180	Canola	cytosol	14.07	21.47
VIT_05s0049g01950.t01	Wine grape	plastid	40.74	20.72
Solyc09g090930.2.1	Tomato	nucleus	29.63	20.1
PGSC0003DMT400003940	Potato	nucleus	29.26	19.65
Solyc03g005710.1.1	Tomato	cytosol	24.81	17.72
TraesCS1A01G172600.1	Wheat	plastid	20.0	15.7
PGSC0003DMT400035002	Potato	plastid	38.52	14.69
TraesCS3A01G368600.1	Wheat	plastid	23.7	13.31
TraesCS1A01G278600.1	Wheat	plastid	22.22	12.77

Protein Annotations

EnsemblPlants:TraesCS2A01G367000.1	EnsemblPlantsGene:TraesCS2A01G367000	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312	PANTHER:PTHR26312:SF78
PFscan:PS50293	SEG:seg	SUPFAM:SSF48452	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr2A:-:611106056..611107790

Molecular Weight (calculated)

29650.3 Da

IEP (calculated)

4.491

GRAVY (calculated)

-0.559

Length

270 amino acids

Sequence
(BLAST)

001: MLLRSSSTPF LHAFLSTTSS SPTPPSSLQL RRAFSDGHLP SLNPSSSGDD DSKTTGLYTE LSFSIYNTFS KAKLEPHQEQ EMEEEQEQQA AQPELPLFLA
101: RGMGIDRLAS GLFTAGMGSE AALARMASGV DQKAVLALDA QYKEMVDEQP GNALFLRNYA QFLHEVKCDS RRAEEYYSRA MLADPTDGEI MSQYAKLVWA
201: VHRDHERSLT YFQKSVQAAP RDSHVLAAYA SFLWEQDEDE DDNDDGGVGG GEQGSPGRAA QPRQLASTAV

Best Arabidopsis Sequence Match ( AT4G32340.1 )
(BLAST)

001: MIMRSASSLD LNLRAAQKPS VPRVVTTART VSAATPRVAK PITRASSDGN LYKIQSPESI TKTISVYHEE TASLRVLEGS RLPQGGSNGG FGGRGGDGAG
101: GGGGGGGGSV DGYYEEMIQR YPGDTLLLSN YARFLKEVKG DGRKAEEYCE RAMLSESGRD GELLSMYGDL IWKNHGDGVR AQSYYDQAVQ SSPDDCNVLA
201: SYARFLWDAE EEVEEEESKH HEDGFSDSTY NPSVSVVS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O49358]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.