Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG92250 | Soybean | cytosol | 87.98 | 88.89 |
| PGSC0003DMT400003940 | Potato | nucleus | 42.46 | 41.29 |
| Solyc09g090930.2.1 | Tomato | nucleus | 41.94 | 41.21 |
| HORVU5Hr1G031990.1 | Barley | nucleus | 11.51 | 38.14 |
| Solyc03g005710.1.1 | Tomato | cytosol | 36.32 | 37.57 |
| VIT_05s0049g01950.t01 | Wine grape | plastid | 49.87 | 36.72 |
| KRG95736 | Soybean | cytosol, nucleus, plastid | 19.44 | 35.68 |
| Os04t0510600-01 | Rice | plastid | 24.3 | 34.3 |
| KRH09728 | Soybean | cytosol | 9.46 | 32.74 |
| TraesCS2D01G363900.1 | Wheat | mitochondrion, plastid | 21.74 | 31.48 |
| TraesCS2A01G367000.1 | Wheat | plastid | 21.48 | 31.11 |
| Zm00001d003035_P001 | Maize | plastid | 21.48 | 30.22 |
| GSMUA_Achr1P01000_001 | Banana | plastid | 20.72 | 29.89 |
| EES12482 | Sorghum | nucleus | 24.04 | 28.48 |
| HORVU2Hr1G088520.1 | Barley | cytosol, nucleus, plastid | 21.48 | 28.19 |
| TraesCS5A01G512000.1 | Wheat | mitochondrion, plastid | 20.46 | 25.48 |
| Os03t0140700-01 | Rice | plastid | 21.48 | 24.78 |
| TraesCS4B01G342900.1 | Wheat | mitochondrion | 19.95 | 24.76 |
| EER92881 | Sorghum | plastid | 21.23 | 24.48 |
| GSMUA_Achr5P15660_001 | Banana | plastid | 18.16 | 24.48 |
| KRH67454 | Soybean | nucleus | 22.25 | 24.37 |
| PGSC0003DMT400035002 | Potato | plastid | 43.73 | 24.15 |
| KRH03683 | Soybean | plastid | 15.86 | 23.75 |
| KRH20249 | Soybean | plastid | 15.6 | 23.74 |
| Zm00001d027613_P002 | Maize | plastid | 20.97 | 23.03 |
| HORVU4Hr1G084230.1 | Barley | mitochondrion, plastid | 19.95 | 22.87 |
| KRH23575 | Soybean | plastid | 13.55 | 20.62 |
| KRH39558 | Soybean | plastid | 12.79 | 19.76 |
| KRH44461 | Soybean | plastid | 14.83 | 18.41 |
| KRH47446 | Soybean | plastid | 14.58 | 18.1 |
| KRH74400 | Soybean | nucleus, plastid | 12.79 | 17.18 |
| KRG98335 | Soybean | plastid | 13.3 | 9.77 |
| KRH73162 | Soybean | mitochondrion | 12.02 | 9.75 |
| KRH46437 | Soybean | plastid | 13.04 | 9.71 |
| KRH14978 | Soybean | cytosol, plastid | 11.25 | 9.22 |
Protein Annotations
| Gene3D:1.25.40.10 | EntrezGene:100805375 | MapMan:35.2 | UniProt:A0A0R0I3F3 | EMBL:ACUP02006610 | ncoils:Coil |
| EnsemblPlantsGene:GLYMA_10G190700 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006396 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:HAT | InterPro:IPR011990 | InterPro:IPR013026 |
| EnsemblPlants:KRH34549 | ProteinID:KRH34549 | ProteinID:KRH34549.1 | PFscan:PS50293 | PANTHER:PTHR26312 | PANTHER:PTHR26312:SF78 |
| SMART:SM00386 | SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | UniParc:UPI0006EE0C19 | SEG:seg |
Description
hypothetical protein
Coordinates
chr10:-:42353832..42357418
Molecular Weight (calculated)
44050.6 Da
IEP (calculated)
3.977
GRAVY (calculated)
-0.604
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MILLLAMSMD SSSNSVMEDE FESTTLHSAP SFAIYNNLHG DDEITPAEVF KRAIGKSLEA TGSGEFSFGS NKMDLIEEEE NENNDWSTGI QNLSIEEEDV
101: QPASPPMYLA AGLGVDGDVG FDKFISDDVF NPSLEESEDL VGYYKRMADE YPCHPLVLKK YALLLQSNGD LRGAEEYFLR ATMADPNEGE ILMQYAKLVW
201: ENHHDKDRAM VYFERAVQAA PQDSNVLAAY TTFLWNIEDD ENEDGKHEIQ SEMETQKAEP VKPSKDESGQ EIDGAHTTTA NCGEENNVED YFKKMLDENP
301: NNPLFLKKYA QFLLQSKRDL QVAEDYYSRA IVADPSDGEM ISEYAKLVWE LHHDQEKASF LFEQAVQATP GDSNVLAAYT CFLWEKDDGE S
101: QPASPPMYLA AGLGVDGDVG FDKFISDDVF NPSLEESEDL VGYYKRMADE YPCHPLVLKK YALLLQSNGD LRGAEEYFLR ATMADPNEGE ILMQYAKLVW
201: ENHHDKDRAM VYFERAVQAA PQDSNVLAAY TTFLWNIEDD ENEDGKHEIQ SEMETQKAEP VKPSKDESGQ EIDGAHTTTA NCGEENNVED YFKKMLDENP
301: NNPLFLKKYA QFLLQSKRDL QVAEDYYSRA IVADPSDGEM ISEYAKLVWE LHHDQEKASF LFEQAVQATP GDSNVLAAYT CFLWEKDDGE S
001: MLKSEASLSI YCDSGDGFKS EDPVTGIEEN LERTVTIGDA IDGGEFSFAK HKEEDSGEGE RGVFEEVIKK LGIGVRDELG FEIERPPSPP MHLAAGLGID
101: KFDLYGSEIK FDLPGYDDKN CGDYYKGMLE EYPLHPLLLK NYAKFLEYKG DLSGAEEYYH KCTVVEPSDG VALANYGRLV MKLHQDEAKA MSYFERAVQA
201: SPDDSIVLAA YASFLWEINA DDDDEDDDED DDESSGQGKD EFEADAAGKG KSSLSKTEDG ETLCRYAKAF WSINNDHEKA LFYFEKAVEA SPNDSIILGE
301: YARFLWEIDE
101: KFDLYGSEIK FDLPGYDDKN CGDYYKGMLE EYPLHPLLLK NYAKFLEYKG DLSGAEEYYH KCTVVEPSDG VALANYGRLV MKLHQDEAKA MSYFERAVQA
201: SPDDSIVLAA YASFLWEINA DDDDEDDDED DDESSGQGKD EFEADAAGKG KSSLSKTEDG ETLCRYAKAF WSINNDHEKA LFYFEKAVEA SPNDSIILGE
301: YARFLWEIDE
Arabidopsis Description
TPR4Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ31]
SUBAcon: [cytoskeleton,nucleus,cytosol]
SUBAcon: [cytoskeleton,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.