Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH34549 | Soybean | nucleus | 88.89 | 87.98 |
| PGSC0003DMT400003940 | Potato | nucleus | 44.7 | 43.03 |
| Solyc09g090930.2.1 | Tomato | nucleus | 44.19 | 42.96 |
| Solyc03g005710.1.1 | Tomato | cytosol | 38.24 | 39.15 |
| KRG95736 | Soybean | cytosol, nucleus, plastid | 20.41 | 37.09 |
| VIT_05s0049g01950.t01 | Wine grape | plastid | 50.65 | 36.91 |
| HORVU5Hr1G031990.1 | Barley | nucleus | 10.85 | 35.59 |
| Os04t0510600-01 | Rice | plastid | 24.29 | 33.94 |
| KRH09728 | Soybean | cytosol | 9.3 | 31.86 |
| TraesCS2D01G363900.1 | Wheat | mitochondrion, plastid | 21.96 | 31.48 |
| TraesCS2A01G367000.1 | Wheat | plastid | 21.71 | 31.11 |
| Zm00001d003035_P001 | Maize | plastid | 21.96 | 30.58 |
| GSMUA_Achr1P01000_001 | Banana | plastid | 21.19 | 30.26 |
| EES12482 | Sorghum | nucleus | 24.29 | 28.48 |
| HORVU2Hr1G088520.1 | Barley | cytosol, nucleus, plastid | 21.71 | 28.19 |
| TraesCS5A01G512000.1 | Wheat | mitochondrion, plastid | 20.41 | 25.16 |
| Os03t0140700-01 | Rice | plastid | 21.96 | 25.07 |
| PGSC0003DMT400035002 | Potato | plastid | 45.74 | 25.0 |
| KRH67454 | Soybean | nucleus | 23.0 | 24.93 |
| EER92881 | Sorghum | plastid | 21.71 | 24.78 |
| TraesCS4B01G342900.1 | Wheat | mitochondrion | 19.9 | 24.44 |
| GSMUA_Achr5P15660_001 | Banana | plastid | 18.09 | 24.14 |
| Zm00001d027613_P002 | Maize | plastid | 21.71 | 23.6 |
| KRH03683 | Soybean | plastid | 15.25 | 22.61 |
| HORVU4Hr1G084230.1 | Barley | mitochondrion, plastid | 19.9 | 22.58 |
| KRH20249 | Soybean | plastid | 14.99 | 22.57 |
| KRH23575 | Soybean | plastid | 13.44 | 20.23 |
| KRH39558 | Soybean | plastid | 12.4 | 18.97 |
| KRH44461 | Soybean | plastid | 15.25 | 18.73 |
| KRH47446 | Soybean | plastid | 14.73 | 18.1 |
| KRH74400 | Soybean | nucleus, plastid | 12.4 | 16.49 |
| KRG98335 | Soybean | plastid | 13.18 | 9.59 |
| KRH46437 | Soybean | plastid | 12.92 | 9.52 |
| KRH73162 | Soybean | mitochondrion | 11.63 | 9.34 |
| KRH14978 | Soybean | cytosol, plastid | 11.37 | 9.22 |
Protein Annotations
| Gene3D:1.25.40.10 | EntrezGene:100783167 | MapMan:35.2 | EMBL:ACUP02012736 | EnsemblPlantsGene:GLYMA_20G199800 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | InterPro:HAT | UniProt:I1NHZ1 | InterPro:IPR011990 | InterPro:IPR013026 | EnsemblPlants:KRG92250 |
| ProteinID:KRG92250 | ProteinID:KRG92250.1 | PFscan:PS50293 | PANTHER:PTHR26312 | PANTHER:PTHR26312:SF78 | SMART:SM00386 |
| SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | UniParc:UPI0002964C3B | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr20:+:43733752..43737132
Molecular Weight (calculated)
43495.6 Da
IEP (calculated)
3.882
GRAVY (calculated)
-0.626
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSSNSVME DEVESTTLHS APSFAIYNNL HGDDDITPEE VLKRTVLVGQ SLEATGSGDF SFGSNKMDLI EEGENENENN DWSTGIRNLS IEEEDVQPAS
101: PPMYLAAGLG VDADVGFDKF ISDDVFNPSL EESEDLEGYY KRMVDEYPCH PLVLKKYAQL LQSNGDLQGA QEYFLQATVA DPNDGEILMQ YAKLVWENHH
201: DKDRAMVYFE RAVQAAPQDS NVLAAYTSFL WNIEDDENED RKHEIQSDME IQKTEPVKPS KEESGQVIDA ANVTTANFGE ESNVEDYLKK MVDENPSNPL
301: FLKKYAQFLL QSKRDLQAAE DYYSRAVVAD PSDGEMISEY ANLVWELHHD QEKASFLFEQ AVQATPGDSN VLAAYTCFLW ETDDAES
101: PPMYLAAGLG VDADVGFDKF ISDDVFNPSL EESEDLEGYY KRMVDEYPCH PLVLKKYAQL LQSNGDLQGA QEYFLQATVA DPNDGEILMQ YAKLVWENHH
201: DKDRAMVYFE RAVQAAPQDS NVLAAYTSFL WNIEDDENED RKHEIQSDME IQKTEPVKPS KEESGQVIDA ANVTTANFGE ESNVEDYLKK MVDENPSNPL
301: FLKKYAQFLL QSKRDLQAAE DYYSRAVVAD PSDGEMISEY ANLVWELHHD QEKASFLFEQ AVQATPGDSN VLAAYTCFLW ETDDAES
001: MLKSEASLSI YCDSGDGFKS EDPVTGIEEN LERTVTIGDA IDGGEFSFAK HKEEDSGEGE RGVFEEVIKK LGIGVRDELG FEIERPPSPP MHLAAGLGID
101: KFDLYGSEIK FDLPGYDDKN CGDYYKGMLE EYPLHPLLLK NYAKFLEYKG DLSGAEEYYH KCTVVEPSDG VALANYGRLV MKLHQDEAKA MSYFERAVQA
201: SPDDSIVLAA YASFLWEINA DDDDEDDDED DDESSGQGKD EFEADAAGKG KSSLSKTEDG ETLCRYAKAF WSINNDHEKA LFYFEKAVEA SPNDSIILGE
301: YARFLWEIDE
101: KFDLYGSEIK FDLPGYDDKN CGDYYKGMLE EYPLHPLLLK NYAKFLEYKG DLSGAEEYYH KCTVVEPSDG VALANYGRLV MKLHQDEAKA MSYFERAVQA
201: SPDDSIVLAA YASFLWEINA DDDDEDDDED DDESSGQGKD EFEADAAGKG KSSLSKTEDG ETLCRYAKAF WSINNDHEKA LFYFEKAVEA SPNDSIILGE
301: YARFLWEIDE
Arabidopsis Description
TPR4Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ31]
SUBAcon: [cytoskeleton,nucleus,cytosol]
SUBAcon: [cytoskeleton,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.