Factsheet for PGSC0003DMT400035002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g005710.1.1	Tomato	cytosol	47.18	88.36
PGSC0003DMT400003940	Potato	nucleus	30.93	54.48
KRG92250	Soybean	cytosol	25.0	45.74
VIT_05s0049g01950.t01	Wine grape	plastid	33.33	44.44
KRH34549	Soybean	nucleus	24.15	43.73
Os04t0510600-01	Rice	plastid	15.68	40.07
TraesCS2D01G363900.1	Wheat	mitochondrion, plastid	14.97	39.26
GSMUA_Achr1P01000_001	Banana	plastid	14.83	38.75
TraesCS2A01G367000.1	Wheat	plastid	14.69	38.52
HORVU5Hr1G031990.1	Barley	nucleus	6.36	38.14
Zm00001d003035_P001	Maize	plastid	14.83	37.77
TraesCS5A01G512000.1	Wheat	mitochondrion, plastid	16.1	36.31
TraesCS4B01G342900.1	Wheat	mitochondrion	15.68	35.24
HORVU2Hr1G088520.1	Barley	cytosol, nucleus, plastid	14.55	34.56
GSMUA_Achr5P15660_001	Banana	plastid	14.12	34.48
Os03t0140700-01	Rice	plastid	16.38	34.22
EES12482	Sorghum	nucleus	15.11	32.42
HORVU4Hr1G084230.1	Barley	mitochondrion, plastid	15.25	31.67
EER92881	Sorghum	plastid	15.11	31.56
PGSC0003DMT400022129	Potato	plastid	15.25	30.0
Zm00001d027613_P002	Maize	plastid	14.97	29.78
PGSC0003DMT400073455	Potato	plastid	9.18	27.2
PGSC0003DMT400079441	Potato	plastid	8.76	26.72
PGSC0003DMT400001660	Potato	mitochondrion, nucleus, plastid	11.02	24.38
PGSC0003DMT400045174	Potato	plastid	10.31	24.17
PGSC0003DMT400069757	Potato	plastid	8.47	13.42
PGSC0003DMT400078227	Potato	plastid	10.03	12.84

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:HAT	InterPro:IPR011990
InterPro:IPR013026	UniProt:M1B1N2	EnsemblPlantsGene:PGSC0003DMG400013458	PGSC:PGSC0003DMG400013458	EnsemblPlants:PGSC0003DMT400035002	PFscan:PS50293
PANTHER:PTHR26312	PANTHER:PTHR26312:SF78	SMART:SM00386	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
UniParc:UPI000294866B	SEG:seg	:	:	:	:

Description

O-linked n-acetylglucosamine transferase, ogt [Source:PGSC_GENE;Acc:PGSC0003DMG400013458]

Coordinates

chr3:-:700585..706669

Molecular Weight (calculated)

79931.8 Da

IEP (calculated)

4.391

GRAVY (calculated)

-0.586

Length

708 amino acids

Sequence
(BLAST)

001: MLLRSSSTPV SQTILVESKK SDFDNTSADH KNVGKVSFHS ASHLCSFSCN SSSDHQLSPR KSNNNLGRKT PRRVQSEGNL KAFVSKCDLD DVYRKGLVSK
101: CDLDEVWLVS ESDLDEVYRK GLVSKCDLDE VWLVSKCDLD EVYRKGLVSK CDLDEVYKKG LVSKCDLDEV YKKGLVSKCD LDEVYKKGLV SKCDLDEVYK
201: KGLVSKCDLD EVYKKGLVSK CDLDEVYKKG LVSKCDLDEV YKKGLVSKCD LDEVYKKGLV SKCDLDEVYR SKVLPRSCHN QETNIILQTE LSFSVYNDED
301: FEEMINDGKL VRAVTIGNEI EDLVGDDFSF GKCIMGLIKE DDDNEDCDEK EDKESEERNE PVCPMYLAAG YGIDVSGMNH SGDIKSLTMG GLMRAGSGAD
401: IVPLNFDEIG DVEAHYKSLL EEYPFNPLVL RNYAQLLQSK GDLSGAEEYY FQATLLDPQD GDILSQYATL VWQLHHDKDR ALSYFEHATH VDPENSYVLA
501: AYANFLWEIN YDDNEHDAGT HLDETKEIEE VATSHNMDFE QDNRQASPLL NLAAGFGIGN CGFSGGMTLN ELIAAEDYYK SMIQENPNNP LVLRNYAQFL
601: DQCKGDLRGA EEYYSRAVLT DASDGEIISQ YANFIWHLHH DQNKASSYFK RAVQASPGNC DVLASYARFL WETEEDEDED EDKDKDEDSD NHKYRFQYFH
701: GVVATSNA

Best Arabidopsis Sequence Match ( AT1G04530.1 )
(BLAST)

001: MLKSEASLSI YCDSGDGFKS EDPVTGIEEN LERTVTIGDA IDGGEFSFAK HKEEDSGEGE RGVFEEVIKK LGIGVRDELG FEIERPPSPP MHLAAGLGID
101: KFDLYGSEIK FDLPGYDDKN CGDYYKGMLE EYPLHPLLLK NYAKFLEYKG DLSGAEEYYH KCTVVEPSDG VALANYGRLV MKLHQDEAKA MSYFERAVQA
201: SPDDSIVLAA YASFLWEINA DDDDEDDDED DDESSGQGKD EFEADAAGKG KSSLSKTEDG ETLCRYAKAF WSINNDHEKA LFYFEKAVEA SPNDSIILGE
301: YARFLWEIDE

Arabidopsis Description

TPR4Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ31]
SUBAcon: [cytoskeleton,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.