Factsheet for HORVU4Hr1G084230.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G512000.1	Wheat	mitochondrion, plastid	80.94	87.9
TraesCS4B01G342900.1	Wheat	mitochondrion	80.06	86.67
HORVU5Hr1G031990.1	Barley	nucleus	27.27	78.81
Os03t0140700-01	Rice	plastid	65.4	65.78
EER92881	Sorghum	plastid	64.22	64.6
Zm00001d027613_P002	Maize	plastid	64.22	61.52
VIT_07s0005g04340.t01	Wine grape	cytosol, mitochondrion, nucleus	19.35	54.55
GSMUA_Achr1P01000_001	Banana	plastid	35.48	44.65
GSMUA_Achr5P15660_001	Banana	plastid	35.19	41.38
KRG95736	Soybean	cytosol, nucleus, plastid	25.51	40.85
HORVU2Hr1G088520.1	Barley	cytosol, nucleus, plastid	31.96	36.58
KRH67454	Soybean	nucleus	38.12	36.41
Solyc09g064630.2.1	Tomato	plastid	36.95	35.29
PGSC0003DMT400022129	Potato	plastid	36.66	34.72
HORVU7Hr1G090280.1	Barley	mitochondrion	24.63	29.17
CDY59180	Canola	cytosol	13.2	25.42
CDY18241	Canola	nucleus	20.23	23.79
CDX89816	Canola	nucleus	19.35	22.68
VIT_05s0049g01950.t01	Wine grape	plastid	35.19	22.6
AT1G04530.1	Thale cress	cytoskeleton, cytosol, nucleus	19.94	21.94
Bra015324.1-P	Field mustard	nucleus	19.35	20.69
KRH34549	Soybean	nucleus	22.87	19.95
KRG92250	Soybean	cytosol	22.58	19.9
PGSC0003DMT400003940	Potato	nucleus	22.58	19.15
Solyc09g090930.2.1	Tomato	nucleus	22.29	19.1
HORVU1Hr1G050780.2	Barley	plastid	19.94	17.85
Solyc03g005710.1.1	Tomato	cytosol	18.48	16.67
PGSC0003DMT400035002	Potato	plastid	31.67	15.25
HORVU1Hr1G073460.2	Barley	plastid	20.23	13.48
HORVU3Hr1G084970.2	Barley	plastid	18.48	13.04
HORVU1Hr1G045530.3	Barley	cytosol	9.09	10.95
HORVU1Hr1G073400.1	Barley	endoplasmic reticulum	3.52	3.75

Protein Annotations

EnsemblPlants:HORVU4Hr1G084230.1	EnsemblPlantsGene:HORVU4Hr1G084230	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312	PANTHER:PTHR26312:SF89
PFscan:PS50293	SEG:seg	SUPFAM:SSF48452	UniParc:UPI000B4692C3	UniProt:A0A287PXC6	MapMan:35.2

Description

No Description!

Coordinates

chrchr4H:+:627958637..627961703

Molecular Weight (calculated)

35927.2 Da

IEP (calculated)

5.001

GRAVY (calculated)

-0.507

Length

341 amino acids

Sequence
(BLAST)

001: MLVRSASTPV LGALHATSGA GGGGGGGGHS PAVHFAESSP TVAYHPSPIS CSLSSDHERS RGGGLRRACS DGNLAALGGR ADDLHHHHLP PRSRPALETI
101: RSFTARDGDR DEEEEDEDDD RETSFGALGL GSSMHAQEHP LFLARGLGID RLGSGLLNAD CGGAGGIDGG GYLVASGGGG GDGSGIEIHY KRLIDEDPCN
201: GLFLRNYAQF LYQVRHPPSL LHSRHCSSDL EMMIGMSQVK GDRRRAEEYY SRAILADPND GELLSEYAKL VWEVHGDEER ASSYFDRAAR ADPHNTHVLA
301: AQAAFLWDTD DGAGPGPEDG DDAMSYAGFP AAHPSMASAT S

Best Arabidopsis Sequence Match ( AT5G20190.1 )
(BLAST)

001: MLLRSASTPL LNSLVHVSSP RDSPIETVES VHQIQRHRSI TLSASSSSCC YSPMSVHSSD DSSRRMKRTA SDSDLRHLTS TKPPVSKFLS GGALMEDVDE
101: GIGFGLIRTS SYDGISWALD EDTEVAGGGG GGMFHGGGKG RSGGRSDGGD GGDDNTDVHY RKMIEANPGN GIFLSNYAKF LKEVRKDYLK AEEYCGRAIL
201: VSPNDGNVLA MYAELVWKIH KDSSRAENYF NQAVAAAPED CYVQASYARF LWDAEEEEEE EKEERHEEEL EHQTSRMNFF TGPSPITAMS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K464]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.