Factsheet for Zm00001d027613_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92881	Sorghum	plastid	83.99	88.2
Os03t0140700-01	Rice	plastid	68.82	72.27
TraesCS5A01G512000.1	Wheat	mitochondrion, plastid	63.48	71.97
TraesCS4B01G342900.1	Wheat	mitochondrion	62.36	70.48
HORVU4Hr1G084230.1	Barley	mitochondrion, plastid	61.52	64.22
HORVU5Hr1G031990.1	Barley	nucleus	21.07	63.56
VIT_07s0005g04340.t01	Wine grape	cytosol, mitochondrion, nucleus	19.1	56.2
GSMUA_Achr1P01000_001	Banana	plastid	36.8	48.34
KRG95736	Soybean	cytosol, nucleus, plastid	26.12	43.66
GSMUA_Achr5P15660_001	Banana	plastid	35.11	43.1
KRH67454	Soybean	nucleus	37.36	37.25
Solyc09g064630.2.1	Tomato	plastid	36.8	36.69
PGSC0003DMT400022129	Potato	plastid	37.08	36.67
Zm00001d003035_P001	Maize	plastid	28.37	36.33
Zm00001d046530_P001	Maize	plastid	26.4	31.65
Zm00001d030086_P001	Maize	plastid	19.66	28.11
CDY59180	Canola	cytosol	12.36	24.86
CDY18241	Canola	nucleus	20.22	24.83
CDX89816	Canola	nucleus	19.94	24.4
AT1G04530.1	Thale cress	cytoskeleton, cytosol, nucleus	20.79	23.87
VIT_05s0049g01950.t01	Wine grape	plastid	33.99	22.79
Bra015324.1-P	Field mustard	nucleus	20.22	22.57
KRG92250	Soybean	cytosol	23.6	21.71
KRH34549	Soybean	nucleus	23.03	20.97
Solyc09g090930.2.1	Tomato	nucleus	22.75	20.35
PGSC0003DMT400003940	Potato	nucleus	22.47	19.9
Zm00001d032535_P002	Maize	plastid	17.42	17.37
Solyc03g005710.1.1	Tomato	cytosol	17.7	16.67
Zm00001d013919_P001	Maize	plastid	16.85	16.53
PGSC0003DMT400035002	Potato	plastid	29.78	14.97
Zm00001d012325_P001	Maize	plastid	20.79	14.34
Zm00001d042812_P001	Maize	plastid	21.07	14.34
Zm00001d010075_P001	Maize	plastid	19.66	13.33
Zm00001d038274_P002	Maize	plastid	18.54	13.15

Protein Annotations

EnsemblPlants:Zm00001d027613_P002	EnsemblPlants:Zm00001d027613_T002	EnsemblPlantsGene:Zm00001d027613	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312
PANTHER:PTHR26312:SF89	PFscan:PS50293	ProteinID:ONL93533.1	SEG:seg	SUPFAM:SSF48452	UniParc:UPI000844A379
UniProt:A0A1D6JNB8	MapMan:35.2	:	:	:	:

Description

Tetratricopeptide repeat (TPR)-like superfamily protein

Coordinates

chr1:-:9015472..9016646

Molecular Weight (calculated)

37385.3 Da

IEP (calculated)

4.790

GRAVY (calculated)

-0.546

Length

356 amino acids

Sequence
(BLAST)

001: MLVRSASTPV LGALHPSGCH SPAVSSPAVH FAESPASAAY HAPPISCHLG GPGSGSDHER SRSRGAGAGM RRTCSEDNLA SLAGGRADDH DHHHLLLPPS
101: GKGAPRARPV PLETIQSFRG PHASTDDEEE EDDDDEDAYE VERELRFGQF SFAGGAYSQE HPLFLARGLG IDRLGSGLLS ADGGGGFGGS DGSGSGGGGG
201: NLVTSGNGGD RSGIETHYKK MIEEDPCNGL FLRNYAQFLY QASSSSSSIS FSPSTVKGDY RRADEYYSRA ILADPDDGEL LSEYAKLVWE VHRDEDRASS
301: YFERAAKASP QNSHVLAAHA AFLWDTDDEE GGADALSYAA FAQPAHSSLA SATATT

Best Arabidopsis Sequence Match ( AT5G20190.1 )
(BLAST)

001: MLLRSASTPL LNSLVHVSSP RDSPIETVES VHQIQRHRSI TLSASSSSCC YSPMSVHSSD DSSRRMKRTA SDSDLRHLTS TKPPVSKFLS GGALMEDVDE
101: GIGFGLIRTS SYDGISWALD EDTEVAGGGG GGMFHGGGKG RSGGRSDGGD GGDDNTDVHY RKMIEANPGN GIFLSNYAKF LKEVRKDYLK AEEYCGRAIL
201: VSPNDGNVLA MYAELVWKIH KDSSRAENYF NQAVAAAPED CYVQASYARF LWDAEEEEEE EKEERHEEEL EHQTSRMNFF TGPSPITAMS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K464]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.