Factsheet for Zm00001d013919_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	extracellular
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93981	Sorghum	plastid	89.26	87.57
Zm00001d032535_P002	Maize	plastid	84.57	85.99
TraesCS1A01G172600.1	Wheat	plastid	61.43	64.83
TraesCS1D01G166000.1	Wheat	plastid	61.43	64.83
TraesCS1B01G191700.1	Wheat	plastid	61.16	64.35
Os10t0501900-01	Rice	plastid	61.71	61.71
HORVU1Hr1G045530.3	Barley	cytosol	27.27	34.98
Zm00001d046530_P001	Maize	plastid	15.43	18.86
Zm00001d012325_P001	Maize	plastid	26.17	18.41
Zm00001d038274_P002	Maize	plastid	24.79	17.93
Zm00001d030086_P001	Maize	plastid	12.12	17.67
Zm00001d003035_P001	Maize	plastid	13.5	17.63
Zm00001d042812_P001	Maize	plastid	25.34	17.59
Zm00001d010075_P001	Maize	plastid	25.34	17.52
Zm00001d027613_P002	Maize	plastid	16.53	16.85

Protein Annotations

EnsemblPlants:Zm00001d013919_P001	EnsemblPlants:Zm00001d013919_T001	EnsemblPlantsGene:Zm00001d013919	EntrezGene:103626131	Gene3D:1.25.40.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
PANTHER:PTHR26312	PANTHER:PTHR26312:SF77	PFscan:PS50293	ProteinID:AQK64809.1	SEG:seg	SUPFAM:SSF48452
UniParc:UPI00022124D9	UniProt:A0A1D6GNK7	MapMan:35.2	:	:	:

Description

Tetratricopeptide repeat (TPR)-like superfamily protein

Coordinates

chr5:-:24817151..24819264

Molecular Weight (calculated)

38485.0 Da

IEP (calculated)

4.412

GRAVY (calculated)

-0.326

Length

363 amino acids

Sequence
(BLAST)

001: MTPASVVAMP RSVPLALALA PFPAPARAEE RRNARSFRPS ACGAGDDQKP PSMAAMPASL RTIQTRRKQA AAQRGVPRAT ATSAAGCAVA ALVKAMEAVQ
101: GAAAGGATEA ARGAGDAVAW VFSKVHLQSP DLAVGLPLLG MVACCLGTIV EAAEMGRVEA KKPEASSGDA EADHPDGNGD AAAEEPEDDD DDMPELVEAD
201: IEKELWGQIG ILHGGGLFGD SSYVHEELDE EEIKEIDSAR ARRRKAAYER AIASGGANSL IMSNYAQLLY EFDKDIDRAE MYFKQAVAAE PADGEAMRRY
301: GMFLWHARGD IGGAEDMFTG AIDEEPESSH HRSSYAWFLW MTGGVETCLI DTTGKQNNGN DVE

Best Arabidopsis Sequence Match ( AT1G07280.1 )
(BLAST)

001: MGVKVATSST FHQWVAHPIV HHSSSLSQTL ASSAVSSPSR RRIIGNDGRS SLSCRSVMQS QRLNPSSPFG TSSTNLRHSK SCELWESTKR PKTQLIRRAF
101: SANVDPFSEE EFAKKMQELT LKFQVSNEEE DNESDTRIDD YTRKMDIVGS HNNFRSDSME PPWPEMVQMS NIERKANSVD LPLSLRIIKR KLQMEEGVLN
201: QVGESACCSV KKAFSSMVFM IRELQSFTLH MRELLLFEDL QGILHRVRKE MQASFVWLFQ QVFSATPTLM VSVMILLANF TVYSIESNSA LAAAVSPPTT
301: LSFSFETTAE ISETQETNQK FDSSMVKTFS VSSPYGKTSF VGGGGGNNIP PPVQSGTDGD GSDQFRKSQF SSSSLGATSA DSDVSVSGQE EIRLWNSILE
401: ETAKMETLDH ETMKGMVSPV EARLEAEESM DYFKTELLYQ TGLSQEPGNV LLLANYAQFL YLIIHDYDRA EKYFKRAAKA EPADAEALNK YATFLWRARN
501: DIWRAEETYL EAISADPTNS VYSANYAHFL WNTGGDETCF PLDAPSQQNN TT

Arabidopsis Description

At1g07280/F22G5_32 [Source:UniProtKB/TrEMBL;Acc:Q8VZC8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.