Factsheet for Zm00001d042812_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01775	Sorghum	plastid	92.73	91.51
Zm00001d012325_P001	Maize	plastid	90.25	91.47
Os01t0855200-01	Rice	plastid	77.44	79.1
TraesCS3B01G400100.1	Wheat	plastid	69.22	75.57
TraesCS3A01G368600.1	Wheat	plastid	69.41	75.47
TraesCS3D01G361500.1	Wheat	plastid	69.02	75.21
HORVU3Hr1G084970.2	Barley	plastid	67.5	73.08
Zm00001d038274_P002	Maize	plastid	58.7	61.16
Zm00001d010075_P001	Maize	plastid	58.51	58.29
GSMUA_Achr9P03650_001	Banana	plastid	48.37	49.9
GSMUA_Achr8P02280_001	Banana	plastid	47.23	49.4
CDY02002	Canola	cytosol, mitochondrion, nucleus	13.96	48.03
GSMUA_Achr6P33690_001	Banana	plastid	47.42	46.44
GSMUA_Achr11P...	Banana	plastid	44.17	46.29
VIT_06s0004g06290.t01	Wine grape	plastid	46.27	45.75
Bra018368.1-P	Field mustard	plastid	39.01	43.68
CDY51354	Canola	plastid	40.15	43.57
KRG98335	Soybean	plastid	44.17	43.42
Bra039995.1-P	Field mustard	plastid	40.15	43.21
Solyc06g076850.2.1	Tomato	plastid	45.12	42.83
PGSC0003DMT400078227	Potato	plastid	44.93	42.5
Bra015570.1-P	Field mustard	plastid	41.68	42.41
CDY10264	Canola	plastid	41.87	42.36
CDX97868	Canola	plastid	40.54	42.23
CDY06694	Canola	plastid	41.49	42.22
KRH46437	Soybean	plastid	42.06	41.9
AT2G29670.2	Thale cress	plastid	42.83	41.79
CDY06247	Canola	plastid	39.2	41.41
Bra031567.1-P	Field mustard	plastid	39.2	41.41
CDY09927	Canola	plastid	37.86	40.0
AT1G07280.1	Thale cress	plastid	41.87	39.67
GSMUA_Achr5P28840_001	Banana	cytosol	41.49	38.68
Bra019495.1-P	Field mustard	plastid	31.74	35.85
CDX99068	Canola	plastid	31.36	35.81
Bra018168.1-P	Field mustard	plastid	31.36	35.81
CDX86126	Canola	plastid	32.89	35.39
CDY38075	Canola	plastid	28.11	34.67
CDY58299	Canola	plastid	31.93	34.43
AT3G47080.1	Thale cress	plastid	32.89	33.4
Zm00001d032535_P002	Maize	plastid	17.97	26.33
Zm00001d013919_P001	Maize	plastid	17.59	25.34
Zm00001d046530_P001	Maize	plastid	13.0	22.9
Zm00001d027613_P002	Maize	plastid	14.34	21.07
Zm00001d030086_P001	Maize	plastid	9.56	20.08
Zm00001d003035_P001	Maize	plastid	10.52	19.78

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100275225	MapMan:35.2	UniProt:A0A1D6N6Y3	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	ProteinID:ONM36348.1	PFAM:PF14559
PFscan:PS50293	PANTHER:PTHR26312	PANTHER:PTHR26312:SF83	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0002217579	EnsemblPlantsGene:Zm00001d042812	EnsemblPlants:Zm00001d042812_P001	EnsemblPlants:Zm00001d042812_T001	SEG:seg	:

Description

Tetratricopeptide repeat (TPR)-like superfamily protein

Coordinates

chr3:-:180955995..180958405

Molecular Weight (calculated)

55641.9 Da

IEP (calculated)

4.787

GRAVY (calculated)

-0.234

Length

523 amino acids

Sequence
(BLAST)

001: MGIQVAAVVI PPPCSSPSSS SSSPASPSSS AIATSPQHAV LGARLARSQS SLACWNAAGL GRRRGGEHTI RRALSASIDS VGSDGGDDEE FSRRIQELAV
101: GQHPGAGGCG WPASVERSAS SVGLPLSLRM LKRRKQQQLE QGRWDERLVD SAGESARAAV GRAFSSMVLI IRELQSFTLQ MRETLLYEDL QGVLARVHAE
201: MHASFVWLFQ HIFSGTPALM VSLMLLLANF TVYSMGDSVA AAASLLPPHA AVAAVEMVDT QQPEQSHSQQ QRFDTPALKT FSTGRTASVG GNGGGGGKVR
301: PVAGATGDGQ SDESSSYRQS GAVLPQDVSQ ATPLGAGAGA GSEASVSDSM AVEEAQQTVQ DELVIWKRIS DEAIRMQASV RAEELMDPEI LEQLVAPVEA
401: PKPDVAYPSE EHVATAQRYE QAVSEEPNSS LLLANFAQFL YQVQGDLDRA EHFFRRAVRA EPADAEALGR YAAFLWQARN DLAAAEETYQ EAIAADPGNA
501: HHAAAYAHFL WNTGGEDTCY PLD

Best Arabidopsis Sequence Match ( AT2G29670.2 )
(BLAST)

001: MGVKVASSST FLQWTTQPII HQSSSPSQTL ASGTITSPSK RRSTVHDGRF LSCRFVTQRL NRSALFGTPS TKLHRPKSCE LWKSSSSSSR PIKTQSFRRV
101: YSANLDPFSD EEFSKKIQEL TLRFNIPHHD DDENSIEPPW NEMVHLSSIE MKANSVDLPL SLRIIKKKRQ WEEGVKQAGE SACCSMNKAF SSMVFMIREL
201: QSFTLHMREI LFYEDLQEIL LRVREEMQQS FVWLFQQVFS ATPTLMVYVM ILLANFTVYS IGNNSSALAA VAPLPPTITE LTTVSETEET NVKFDSSVVK
301: TFFVSSPSGS IASVGGNNNG GGGNVKPVLS GTDGDGSDGS EQFRTIIPEG VSQLSSSNFG SEPSVSGQDE HRLWNSMVEE AERMQYSNID DSLDQETRKR
401: FVSHVEARVE AEEDTGYFKT ELMYQTELSQ EPNNPLLLAN YAQFLYLVSN DHDRAEEYFK RAVGVEPKDA EAFSKYATFL WRARDDLWAA EETFLEAIDA
501: DPTNSYYAAN YANFLWNTGG DDTCFPLDDE SHEDTI

Arabidopsis Description

At2g29670/T27A16.23 [Source:UniProtKB/TrEMBL;Acc:O82388]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.