CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015570.1-P	Field mustard	plastid	99.42	99.42
CDY10264	Canola	plastid	96.69	96.13
AT1G07280.1	Thale cress	plastid	83.46	77.72
CDY06247	Canola	plastid	74.12	76.97
CDY09927	Canola	plastid	73.15	75.96
CDY02002	Canola	cytosol, mitochondrion, nucleus	20.62	69.74
CDY51354	Canola	plastid	59.14	63.07
CDX97868	Canola	plastid	60.31	61.75
VIT_06s0004g06290.t01	Wine grape	plastid	56.03	54.44
KRG98335	Soybean	plastid	54.67	52.82
KRH46437	Soybean	plastid	52.92	51.81
Solyc06g076850.2.1	Tomato	plastid	53.89	50.27
PGSC0003DMT400078227	Potato	plastid	53.89	50.09
CDX99068	Canola	plastid	42.61	47.82
CDX86126	Canola	plastid	43.58	46.09
GSMUA_Achr8P02280_001	Banana	plastid	43.97	45.2
CDY58299	Canola	plastid	42.61	45.15
GSMUA_Achr9P03650_001	Banana	plastid	43.39	43.98
CDY38075	Canola	plastid	35.8	43.4
Os01t0855200-01	Rice	plastid	43.19	43.36
TraesCS3D01G361500.1	Wheat	plastid	40.47	43.33
TraesCS3B01G400100.1	Wheat	plastid	40.27	43.22
TraesCS3A01G368600.1	Wheat	plastid	40.27	43.04
HORVU3Hr1G084970.2	Barley	plastid	39.69	42.24
GSMUA_Achr6P33690_001	Banana	plastid	43.58	41.95
GSMUA_Achr11P...	Banana	plastid	40.66	41.88
Os05t0447700-01	Rice	plastid	39.3	41.74
Zm00001d012325_P001	Maize	plastid	41.83	41.67
Zm00001d042812_P001	Maize	plastid	42.22	41.49
TraesCS1B01G287500.1	Wheat	plastid	38.52	41.34
EES01775	Sorghum	plastid	42.41	41.13
TraesCS1D01G277900.1	Wheat	plastid	37.74	40.93
TraesCS1A01G278600.1	Wheat	plastid	37.16	40.64
KXG22120	Sorghum	plastid	39.88	40.2
Zm00001d038274_P002	Maize	plastid	38.52	39.44
Zm00001d010075_P001	Maize	plastid	39.69	38.86
HORVU1Hr1G073460.2	Barley	plastid	38.13	38.28
GSMUA_Achr5P28840_001	Banana	cytosol	40.47	37.08
CDX78813	Canola	mitochondrion	11.09	24.89
CDX76550	Canola	plastid	12.06	23.57
CDY08881	Canola	plastid	11.87	23.46
CDX75237	Canola	plastid	11.28	23.39
CDX68837	Canola	mitochondrion, plastid	11.09	22.8
CDY44501	Canola	mitochondrion	10.7	22.63
CDY45101	Canola	plastid	12.26	22.26
CDY60380	Canola	plastid	11.48	22.01
CDX88849	Canola	plastid	11.48	21.93
CDX92483	Canola	plastid	11.67	21.43
CDX87295	Canola	nucleus	10.51	21.34
CDY35827	Canola	plastid	11.67	20.62
CDY59180	Canola	cytosol	6.42	18.64
CDY39992	Canola	nucleus	11.09	18.63
CDY37568	Canola	nucleus	10.89	17.83
CDY41120	Canola	mitochondrion	10.51	17.59
CDX89816	Canola	nucleus	9.73	17.18
CDY18241	Canola	nucleus	9.34	16.55

Protein Annotations

EnsemblPlants:CDY06694	EnsemblPlantsGene:GSBRNA2T00122871001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312	PANTHER:PTHR26312:SF83
PFscan:PS50293	ProteinID:CDY06694	ProteinID:CDY06694.1	SEG:seg	SUPFAM:SSF48452	UniParc:UPI0004EE636C
MapMan:35.2	:	:	:	:	:

Description

BnaA10g04730D

Coordinates

chrLK031972:+:329075..332299

Molecular Weight (calculated)

57091.3 Da

IEP (calculated)

5.523

GRAVY (calculated)

-0.353

Length

514 amino acids

Sequence
(BLAST)

001: MGVKVGTTST FHHLVSQTLV SSAVSSPSKR RSFGHDGRSL SCRSLMQTPP PSSPLFGSLR HSKSSCELLK SSTPTKTQLI RRAFTGSVDP FSEEEFSKKM
101: QELSLKFQSS NEEENSFGLD RSSTSVEPPW PEMVQMSSIE RKANSVDLPI SLRIIKRKLR MEEGVVMTQV GESAVKRAFS SMVFMIRELQ SFTLHMRELL
201: LFEDLQGILL RVRKEMHASF VWLFQQVFSA TPTLMVSVMI LLANFTVYSI GSNSALAAAA TPPTATVSFR FDQTEISTSH EKFDSSAIKT FSVSSPNGKT
301: SFVGGGGNGG NNVPPVQSGT DGDGSDQFRT PSQFSSSSLG ATADSEVSVS GQEESRLWNS IMEESEKMEK LDHETMKQMV APVEARLEAE ESMDYFKTEL
401: LYQTGLSQQP DNVLLLANYA QFLYLIIHDY DRAEKYFKRA AKAEPADAEA LSKYATFLWK ARNDIWRAEE TFLEAISADP TNSFYSANYA HFLWNTGGDE
501: TCFPLDAPPQ QNTT

Best Arabidopsis Sequence Match ( AT1G07280.2 )
(BLAST)

001: MGVKVATSST FHQWVAHPIV HHSSSLSQTL ASSAVSSPSR RRIIGNDGRS SLSCRSVMQS QRLNPSSPFG TSSTNLRHSK SCELWESTKR PKTQLIRRAF
101: SANVDPFSEE EFAKKMQELT LKFQVSNEEE DNESDTRIDD YTRKMDIVGS HNNFRSDSME PPWPEMVQMS NIERKANSVD LPLSLRIIKR KLQMEEGVLN
201: QVGESACCSV KKAFSSMVFM IRELQSFTLH MRELLLFEDL QGILHRVRKE MQASFVWLFQ QVFSATPTLM VSVMILLANF TVYSIESNSA LAAAVSPPTT
301: LSFSFETTAE ISETQETNQK FDSSMVKTFS VSSPYGKTSF VGGGGGNNIP PPVQSGTDGD GSDQFRKSQF SSSSLGATSA DSDVSVSGQE EIRLWNSILE
401: ETAKMETLDH ETMKGMVSPV EARLEAEESM DYFKTELLYQ TGLSQEPGNV LLLANYAQFL YLIIHDYDRA EKYFKRAAKA EPADAEALNK YATFLWRARN
501: DIWRAEETYL EAISADPTNS VYSANYAHFL WNTGGDETCF PLDAPSQQNN TT

Arabidopsis Description

At1g07280/F22G5_32 [Source:UniProtKB/TrEMBL;Acc:Q8VZC8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.