CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035194.1-P	Field mustard	nucleus	99.21	82.03
CDY39992	Canola	nucleus	96.84	80.07
CDY37568	Canola	nucleus	79.45	64.01
AT1G80130.1	Thale cress	nucleus	76.28	63.28
CDY41120	Canola	mitochondrion	76.28	62.87
GSMUA_Achr2P15930_001	Banana	cytosol	17.39	36.67
KRH23575	Soybean	plastid	35.57	35.02
CDX92483	Canola	plastid	38.74	35.0
CDY35827	Canola	plastid	39.13	34.02
CDX88849	Canola	plastid	35.97	33.83
CDY60380	Canola	plastid	35.18	33.21
PGSC0003DMT400073455	Potato	plastid	30.83	32.64
Solyc06g068130.2.1	Tomato	plastid	30.83	32.5
CDY45101	Canola	plastid	35.97	32.16
CDX75237	Canola	plastid	31.23	31.85
CDX68837	Canola	mitochondrion, plastid	31.23	31.6
PGSC0003DMT400001660	Potato	mitochondrion, nucleus, plastid	39.92	31.56
KRH47446	Soybean	plastid	38.34	30.79
KRH44461	Soybean	plastid	38.34	30.79
Solyc03g116670.2.1	Tomato	nucleus	37.94	30.48
KRH09728	Soybean	cytosol	13.04	29.2
HORVU7Hr1G090280.1	Barley	mitochondrion	32.81	28.82
TraesCS7D01G374500.1	Wheat	mitochondrion	31.23	27.92
Os06t0606700-00	Rice	plastid	30.43	27.7
TraesCS7A01G377700.1	Wheat	mitochondrion	31.23	27.53
TraesCS7B01G279400.1	Wheat	mitochondrion	31.62	27.3
CDX78813	Canola	mitochondrion	24.11	26.64
Zm00001d046530_P001	Maize	plastid	31.23	26.6
CDY08881	Canola	plastid	26.48	25.77
CDX76550	Canola	plastid	26.48	25.48
CDY44501	Canola	mitochondrion	24.11	25.1
EER88623	Sorghum	mitochondrion	31.62	25.0
Os04t0496700-00	Rice	nucleus	19.37	23.79
CDY02002	Canola	cytosol, mitochondrion, nucleus	11.86	19.74
Os07t0542800-00	Rice	cytosol, mitochondrion, nucleus, plastid	18.97	19.51
CDY59180	Canola	cytosol	12.65	18.08
CDY18241	Canola	nucleus	17.79	15.52
CDX89816	Canola	nucleus	17.79	15.46
CDY09927	Canola	plastid	20.95	10.71
CDX97868	Canola	plastid	20.95	10.56
CDY06694	Canola	plastid	21.34	10.51
CDY10264	Canola	plastid	21.34	10.44
CDY51354	Canola	plastid	19.76	10.37
CDY06247	Canola	plastid	20.16	10.3
CDX86126	Canola	plastid	17.0	8.85
CDX99068	Canola	plastid	15.81	8.73
CDY58299	Canola	plastid	14.23	7.42
CDY38075	Canola	plastid	12.25	7.31

Protein Annotations

EnsemblPlants:CDX87295	EnsemblPlantsGene:GSBRNA2T00146258001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312	PANTHER:PTHR26312:SF75	ProteinID:CDX87295	ProteinID:CDX87295.1
SEG:seg	SUPFAM:SSF48452	UniParc:UPI0004EE8E38	MapMan:35.2	:	:

Description

BnaA07g35780D

Coordinates

chrLK031850:-:53791..54873

Molecular Weight (calculated)

27841.3 Da

IEP (calculated)

6.600

GRAVY (calculated)

-0.758

Length

253 amino acids

Sequence
(BLAST)

001: MLLRSTSAPI LNSWLPQHCS RESSPEPESQ LQRRNRSLSI LSSKSIDRHT GELLHQTLCV HKESVHKSSN KENDGNDVIS RRQRRSSLDE SSHGTVYRKK
101: ILDPSSTFLM ERLFSSSGQG EKVCDDDDRL ETLVSGGSDG MGSSGGKICT GGGVGGSGVD GGGSEDATDV YYREMINLNP GNSILTGNYA KFLKEVRGDM
201: KRAEEYCERA ILGSTNDGNV LSLYADLILH NHGDRKRAHS YFQQAAQMSP EDW

Best Arabidopsis Sequence Match ( AT1G80130.1 )
(BLAST)

001: MLLRSTSAPI LNSWLPQHCS RESSPEPESQ LWRRSTSLSL FSSKSIDGHT GEQLHQALSD NKEIIILKSK SNEHSYKTPT SSRQRRSSLD ETRYTKKTLD
101: RSSPFLVERL FSSSGQGDKA SSNDRLETLV SGGGGGMGGS GGNICNGGGG VGGSGVDGGR SEDATDTYYR EMIDSNPGNS LLTGNYAKFL KEVKGDMKKA
201: EEYCERAILG NTNDGNVLSL YADLILHNHQ DRQRAHSYYK QAVKMSPEDC YVQASYARFL WDVDEDEEDE ALGEEEENLS DETGHVPPTT MFRDFPQHTS
301: ITASS

Arabidopsis Description

F18B13.21 protein [Source:UniProtKB/TrEMBL;Acc:Q9SSC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.