Factsheet for Solyc06g068130.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073455	Potato	plastid	90.42	90.8
KRH09728	Soybean	cytosol	21.67	46.02
GSMUA_Achr2P15930_001	Banana	cytosol	22.92	45.83
Solyc07g008210.2.1	Tomato	cytosol, nucleus, plastid	35.42	36.96
Solyc03g116670.2.1	Tomato	nucleus	45.83	34.92
CDX75237	Canola	plastid	35.83	34.68
KRH23575	Soybean	plastid	37.08	34.63
AT4G32340.1	Thale cress	mitochondrion	33.75	34.03
Bra011339.1-P	Field mustard	plastid	34.58	34.02
CDX68837	Canola	mitochondrion, plastid	35.42	34.0
AT1G80130.1	Thale cress	nucleus	40.0	31.48
CDX87295	Canola	nucleus	32.5	30.83
Bra008495.1-P	Field mustard	mitochondrion, nucleus	38.75	30.79
Os06t0606700-00	Rice	plastid	35.42	30.58
HORVU7Hr1G090280.1	Barley	mitochondrion	36.25	30.21
Bra035194.1-P	Field mustard	nucleus	37.92	29.74
CDY39992	Canola	nucleus	37.5	29.41
TraesCS7B01G279400.1	Wheat	mitochondrion	35.83	29.35
CDY41120	Canola	mitochondrion	37.5	29.32
CDY37568	Canola	nucleus	38.33	29.3
TraesCS7A01G377700.1	Wheat	mitochondrion	35.0	29.27
KRH44461	Soybean	plastid	38.33	29.21
TraesCS7D01G374500.1	Wheat	mitochondrion	34.17	28.98
KRH47446	Soybean	plastid	37.92	28.89
Zm00001d046530_P001	Maize	plastid	34.58	27.95
EER88623	Sorghum	mitochondrion	34.58	25.94
Os04t0496700-00	Rice	nucleus	20.83	24.27
Solyc08g076730.2.1	Tomato	plastid	30.0	23.84
Os07t0542800-00	Rice	cytosol, mitochondrion, nucleus, plastid	22.08	21.54
Solyc09g064630.2.1	Tomato	plastid	29.17	19.61
Solyc09g090930.2.1	Tomato	nucleus	21.67	13.07
Solyc06g076850.2.1	Tomato	plastid	24.17	10.53
Solyc05g052700.2.1	Tomato	extracellular	18.75	9.98
Solyc03g005710.1.1	Tomato	cytosol	15.42	9.79

Protein Annotations

EnsemblPlants:Solyc06g068130.2.1	EnsemblPlantsGene:Solyc06g068130.2	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312	PANTHER:PTHR26312:SF75
PFAM:PF13431	PFscan:PS50293	SEG:seg	SUPFAM:SSF48452	UniParc:UPI000276617B	UniProt:K4C7Y8
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:42229006..42231691

Molecular Weight (calculated)

26721.9 Da

IEP (calculated)

5.881

GRAVY (calculated)

-0.725

Length

240 amino acids

Sequence
(BLAST)

001: MLLRSSSSSN CILNSWISNF RTPLSTSIQL NYDENYCYCN RREMDGPDQK KNNIPMNKIS KRNSRSNIEL SSSTYNDEVK TTKFGSSEDY CAAPEDGGGG
101: KVYSGGRWTG GGRGGDGSGS GSGSDNSNGW HGNENTEAYY KKMIETYPTN ALLLANYARF LKEVKGDLVK AEEYCGRAVV LNPMDGNVLS LYADLIWLTQ
201: KNASRANAYF DQAVKFDPHD CYVVASYARF LWDAEEELKK

Best Arabidopsis Sequence Match ( AT5G20190.1 )
(BLAST)

001: MLLRSASTPL LNSLVHVSSP RDSPIETVES VHQIQRHRSI TLSASSSSCC YSPMSVHSSD DSSRRMKRTA SDSDLRHLTS TKPPVSKFLS GGALMEDVDE
101: GIGFGLIRTS SYDGISWALD EDTEVAGGGG GGMFHGGGKG RSGGRSDGGD GGDDNTDVHY RKMIEANPGN GIFLSNYAKF LKEVRKDYLK AEEYCGRAIL
201: VSPNDGNVLA MYAELVWKIH KDSSRAENYF NQAVAAAPED CYVQASYARF LWDAEEEEEE EKEERHEEEL EHQTSRMNFF TGPSPITAMS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K464]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.