CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008495.1-P	Field mustard	mitochondrion, nucleus	95.54	99.34
CDY41120	Canola	mitochondrion	93.31	95.44
CDX87295	Canola	nucleus	64.01	79.45
CDY39992	Canola	nucleus	76.75	78.76
AT1G80130.1	Thale cress	nucleus	69.43	71.48
GSMUA_Achr2P15930_001	Banana	cytosol	19.11	50.0
KRH09728	Soybean	cytosol	16.24	45.13
KRH23575	Soybean	plastid	35.67	43.58
CDX92483	Canola	plastid	36.94	41.43
CDY35827	Canola	plastid	36.94	39.86
CDY45101	Canola	plastid	35.67	39.58
CDX75237	Canola	plastid	31.21	39.52
CDX88849	Canola	plastid	33.44	39.03
PGSC0003DMT400073455	Potato	plastid	29.62	38.91
CDY60380	Canola	plastid	33.12	38.81
CDX68837	Canola	mitochondrion, plastid	30.89	38.8
Solyc06g068130.2.1	Tomato	plastid	29.3	38.33
KRH47446	Soybean	plastid	36.94	36.83
PGSC0003DMT400001660	Potato	mitochondrion, nucleus, plastid	37.26	36.56
KRH44461	Soybean	plastid	36.31	36.19
Solyc03g116670.2.1	Tomato	nucleus	35.03	34.92
Zm00001d046530_P001	Maize	plastid	29.62	31.31
Os06t0606700-00	Rice	plastid	27.71	31.3
HORVU7Hr1G090280.1	Barley	mitochondrion	28.34	30.9
CDX78813	Canola	mitochondrion	22.29	30.57
TraesCS7D01G374500.1	Wheat	mitochondrion	26.75	29.68
TraesCS7A01G377700.1	Wheat	mitochondrion	27.07	29.62
TraesCS7B01G279400.1	Wheat	mitochondrion	27.39	29.35
EER88623	Sorghum	mitochondrion	28.98	28.44
CDY44501	Canola	mitochondrion	21.34	27.57
CDY08881	Canola	plastid	22.29	26.92
CDX76550	Canola	plastid	21.66	25.86
Os04t0496700-00	Rice	nucleus	15.61	23.79
CDY02002	Canola	cytosol, mitochondrion, nucleus	11.46	23.68
CDY18241	Canola	nucleus	19.43	21.03
CDX89816	Canola	nucleus	19.11	20.62
CDY59180	Canola	cytosol	11.46	20.34
Os07t0542800-00	Rice	cytosol, mitochondrion, nucleus, plastid	14.65	18.7
CDX97868	Canola	plastid	17.52	10.96
CDX99068	Canola	plastid	15.92	10.92
CDY09927	Canola	plastid	17.2	10.91
CDY06694	Canola	plastid	17.83	10.89
CDY51354	Canola	plastid	16.56	10.79
CDY06247	Canola	plastid	16.88	10.71
CDY10264	Canola	plastid	17.52	10.64
CDX86126	Canola	plastid	16.24	10.49
CDY38075	Canola	plastid	12.74	9.43
CDY58299	Canola	plastid	13.38	8.66

Protein Annotations

EnsemblPlants:CDY37568	EnsemblPlantsGene:GSBRNA2T00064195001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR26312	PANTHER:PTHR26312:SF75	ProteinID:CDY37568
ProteinID:CDY37568.1	SEG:seg	SUPFAM:SSF48452	UniParc:UPI0004EDF2F1	UniProt:A0A078HL37	MapMan:35.2

Description

BnaA02g20020DBnaA02g20020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HL37]

Coordinates

chrLK032403:-:103508..105108

Molecular Weight (calculated)

35149.2 Da

IEP (calculated)

4.390

GRAVY (calculated)

-0.845

Length

314 amino acids

Sequence
(BLAST)

001: MLLRTTSAPI LNSWLQQHCS RESSPEPESL LQPRNRSLSL LASKSIDEHT GEMLHQAFSE HRESVLKSSY NDHDSSNVLP RRQRRSSLDE SSHGTAYNGK
101: ILDPSSTLLT ERLFSGSGLG EKVSDDEDHL EALVIGGAGG MGSSGVKICN GGDDSGSSGS EDATDVYYRE MINLTPGNSL LTGNYAKFLK EVRGDMKKAE
201: EYCERAILGN TNDGNVLSLY ADLILHNHGD RKRAHSYFQQ AAKMSPEDCY VQASYARFLW DVEDDEYEEE EEEEEEEEEE EEEEKEQLSD EIGHMPPTTI
301: FRDFPKHARI STTS

Best Arabidopsis Sequence Match ( AT1G80130.1 )
(BLAST)

001: MLLRSTSAPI LNSWLPQHCS RESSPEPESQ LWRRSTSLSL FSSKSIDGHT GEQLHQALSD NKEIIILKSK SNEHSYKTPT SSRQRRSSLD ETRYTKKTLD
101: RSSPFLVERL FSSSGQGDKA SSNDRLETLV SGGGGGMGGS GGNICNGGGG VGGSGVDGGR SEDATDTYYR EMIDSNPGNS LLTGNYAKFL KEVKGDMKKA
201: EEYCERAILG NTNDGNVLSL YADLILHNHQ DRQRAHSYYK QAVKMSPEDC YVQASYARFL WDVDEDEEDE ALGEEEENLS DETGHVPPTT MFRDFPQHTS
301: ITASS

Arabidopsis Description

F18B13.21 protein [Source:UniProtKB/TrEMBL;Acc:Q9SSC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.