Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89816 | Canola | nucleus | 61.58 | 37.46 |
| CDY18241 | Canola | nucleus | 58.76 | 35.86 |
| AT1G04530.1 | Thale cress | cytoskeleton, cytosol, nucleus | 60.45 | 34.52 |
| VIT_07s0005g04340.t01 | Wine grape | cytosol, mitochondrion, nucleus | 14.69 | 21.49 |
| CDY02002 | Canola | cytosol, mitochondrion, nucleus | 14.69 | 17.11 |
| GSMUA_Achr1P01000_001 | Banana | plastid | 25.99 | 16.97 |
| KRG95736 | Soybean | cytosol, nucleus, plastid | 20.34 | 16.9 |
| CDX78813 | Canola | mitochondrion | 21.47 | 16.59 |
| CDY44501 | Canola | mitochondrion | 22.6 | 16.46 |
| GSMUA_Achr5P15660_001 | Banana | plastid | 26.55 | 16.21 |
| CDY08881 | Canola | plastid | 22.6 | 15.38 |
| CDX76550 | Canola | plastid | 22.6 | 15.21 |
| Os04t0510600-01 | Rice | plastid | 23.73 | 15.16 |
| TraesCS5A01G512000.1 | Wheat | mitochondrion, plastid | 26.55 | 14.97 |
| TraesCS4B01G342900.1 | Wheat | mitochondrion | 26.55 | 14.92 |
| Zm00001d003035_P001 | Maize | plastid | 23.16 | 14.75 |
| TraesCS2D01G363900.1 | Wheat | mitochondrion, plastid | 22.03 | 14.44 |
| CDX75237 | Canola | plastid | 19.77 | 14.11 |
| TraesCS2A01G367000.1 | Wheat | plastid | 21.47 | 14.07 |
| CDX68837 | Canola | mitochondrion, plastid | 19.77 | 14.0 |
| CDY60380 | Canola | plastid | 20.34 | 13.43 |
| CDX88849 | Canola | plastid | 20.34 | 13.38 |
| EER92881 | Sorghum | plastid | 25.42 | 13.27 |
| HORVU4Hr1G084230.1 | Barley | mitochondrion, plastid | 25.42 | 13.2 |
| HORVU2Hr1G088520.1 | Barley | cytosol, nucleus, plastid | 22.03 | 13.09 |
| Os03t0140700-01 | Rice | plastid | 24.86 | 12.98 |
| EES12482 | Sorghum | nucleus | 23.73 | 12.73 |
| CDY45101 | Canola | plastid | 20.34 | 12.72 |
| CDX87295 | Canola | nucleus | 18.08 | 12.65 |
| Zm00001d027613_P002 | Maize | plastid | 24.86 | 12.36 |
| KRH67454 | Soybean | nucleus | 24.86 | 12.32 |
| Solyc09g064630.2.1 | Tomato | plastid | 24.29 | 12.04 |
| PGSC0003DMT400022129 | Potato | plastid | 24.29 | 11.94 |
| HORVU5Hr1G031990.1 | Barley | nucleus | 7.91 | 11.86 |
| CDX92483 | Canola | plastid | 18.64 | 11.79 |
| CDY41120 | Canola | mitochondrion | 20.34 | 11.73 |
| CDY35827 | Canola | plastid | 19.21 | 11.68 |
| CDY37568 | Canola | nucleus | 20.34 | 11.46 |
| CDY39992 | Canola | nucleus | 18.08 | 10.46 |
| CDX97868 | Canola | plastid | 22.6 | 7.97 |
| CDY51354 | Canola | plastid | 20.9 | 7.68 |
| CDY09927 | Canola | plastid | 20.34 | 7.27 |
| CDY06247 | Canola | plastid | 19.77 | 7.07 |
| CDX99068 | Canola | plastid | 17.51 | 6.77 |
| CDY06694 | Canola | plastid | 18.64 | 6.42 |
| CDY10264 | Canola | plastid | 18.64 | 6.38 |
| CDY58299 | Canola | plastid | 16.95 | 6.19 |
| CDX86126 | Canola | plastid | 16.95 | 6.17 |
| CDY38075 | Canola | plastid | 14.12 | 5.9 |
Protein Annotations
| EnsemblPlants:CDY59180 | EnsemblPlantsGene:GSBRNA2T00025697001 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR011990 | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR26312 | PANTHER:PTHR26312:SF89 | ProteinID:CDY59180 | ProteinID:CDY59180.1 |
| SUPFAM:SSF48452 | UniParc:UPI0004EEEC01 | UniProt:A0A078J500 | MapMan:35.2 | : | : |
Description
BnaC08g50130DBnaC08g50130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J500]
Coordinates
chrLK033736:-:27028..27710
Molecular Weight (calculated)
20042.0 Da
IEP (calculated)
4.229
GRAVY (calculated)
-0.821
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTNNTIQSK DDQERAISLK PEDPATGIEE GTVGDSVDAG FRFAKHNTYI LSIKEEDSQT ERGDEDRFDN EQPPSPPMHL SAGLEIDKFD LYGKEINFDL
101: PSFDDESCGD YYKRILDEYP SHPLLLKNYA SFLEQRGDLK GAEEYYHKCT EGYHKCTEVE PSDGVALANY GRLVMLL
101: PSFDDESCGD YYKRILDEYP SHPLLLKNYA SFLEQRGDLK GAEEYYHKCT EGYHKCTEVE PSDGVALANY GRLVMLL
001: MLKSEASLSI YCDSGDGFKS EDPVTGIEEN LERTVTIGDA IDGGEFSFAK HKEEDSGEGE RGVFEEVIKK LGIGVRDELG FEIERPPSPP MHLAAGLGID
101: KFDLYGSEIK FDLPGYDDKN CGDYYKGMLE EYPLHPLLLK NYAKFLEYKG DLSGAEEYYH KCTVVEPSDG VALANYGRLV MKLHQDEAKA MSYFERAVQA
201: SPDDSIVLAA YASFLWEINA DDDDEDDDED DDESSGQGKD EFEADAAGKG KSSLSKTEDG ETLCRYAKAF WSINNDHEKA LFYFEKAVEA SPNDSIILGE
301: YARFLWEIDE
101: KFDLYGSEIK FDLPGYDDKN CGDYYKGMLE EYPLHPLLLK NYAKFLEYKG DLSGAEEYYH KCTVVEPSDG VALANYGRLV MKLHQDEAKA MSYFERAVQA
201: SPDDSIVLAA YASFLWEINA DDDDEDDDED DDESSGQGKD EFEADAAGKG KSSLSKTEDG ETLCRYAKAF WSINNDHEKA LFYFEKAVEA SPNDSIILGE
301: YARFLWEIDE
Arabidopsis Description
TPR4Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ31]
SUBAcon: [cytoskeleton,nucleus,cytosol]
SUBAcon: [cytoskeleton,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.