Subcellular Localization
min:
: max
Winner_takes_all: cytoskeleton, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89816 | Canola | nucleus | 74.52 | 79.38 |
| CDY18241 | Canola | nucleus | 71.61 | 76.55 |
| Bra015324.1-P | Field mustard | nucleus | 74.19 | 72.1 |
| CDY59180 | Canola | cytosol | 34.52 | 60.45 |
| VIT_07s0005g04340.t01 | Wine grape | cytosol, mitochondrion, nucleus | 19.35 | 49.59 |
| KRG95736 | Soybean | cytosol, nucleus, plastid | 22.58 | 32.86 |
| HORVU5Hr1G031990.1 | Barley | nucleus | 10.97 | 28.81 |
| GSMUA_Achr1P01000_001 | Banana | plastid | 24.52 | 28.04 |
| Os04t0510600-01 | Rice | plastid | 24.84 | 27.8 |
| TraesCS2D01G363900.1 | Wheat | mitochondrion, plastid | 22.9 | 26.3 |
| AT4G17940.1 | Thale cress | mitochondrion | 23.23 | 26.28 |
| TraesCS2A01G367000.1 | Wheat | plastid | 22.58 | 25.93 |
| Zm00001d003035_P001 | Maize | plastid | 23.23 | 25.9 |
| AT4G32340.1 | Thale cress | mitochondrion | 19.68 | 25.63 |
| HORVU2Hr1G088520.1 | Barley | cytosol, nucleus, plastid | 22.9 | 23.83 |
| TraesCS5A01G512000.1 | Wheat | mitochondrion, plastid | 23.87 | 23.57 |
| GSMUA_Achr5P15660_001 | Banana | plastid | 21.94 | 23.45 |
| TraesCS4B01G342900.1 | Wheat | mitochondrion | 23.23 | 22.86 |
| EES12482 | Sorghum | nucleus | 24.19 | 22.73 |
| KRH67454 | Soybean | nucleus | 25.48 | 22.13 |
| Os03t0140700-01 | Rice | plastid | 24.19 | 22.12 |
| EER92881 | Sorghum | plastid | 23.87 | 21.83 |
| AT5G20190.1 | Thale cress | plastid | 20.0 | 21.38 |
| Zm00001d027613_P002 | Maize | plastid | 23.87 | 20.79 |
| PGSC0003DMT400022129 | Potato | plastid | 23.87 | 20.56 |
| Solyc09g064630.2.1 | Tomato | plastid | 23.23 | 20.17 |
| HORVU4Hr1G084230.1 | Barley | mitochondrion, plastid | 21.94 | 19.94 |
| AT1G80130.1 | Thale cress | nucleus | 19.35 | 19.67 |
| AT2G29670.2 | Thale cress | plastid | 17.74 | 10.26 |
| AT3G47080.1 | Thale cress | plastid | 14.84 | 8.93 |
| AT1G07280.1 | Thale cress | plastid | 15.16 | 8.51 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.2 | EntrezGene:839500 | ProteinID:AEE27710.1 | ArrayExpress:AT1G04530 | EnsemblPlantsGene:AT1G04530 |
| RefSeq:AT1G04530 | TAIR:AT1G04530 | RefSeq:AT1G04530-TAIR-G | EnsemblPlants:AT1G04530.1 | TAIR:AT1G04530.1 | EMBL:AY065305 |
| EMBL:AY096435 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006396 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:HAT | InterPro:IPR011990 | InterPro:IPR013026 |
| InterPro:IPR019734 | RefSeq:NP_563709.1 | PFAM:PF13181 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50293 | PANTHER:PTHR26312 | PANTHER:PTHR26312:SF89 |
| UniProt:Q8VZ31 | SMART:SM00386 | SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | Symbol:TPR4 |
| InterPro:TPR_repeat | UniParc:UPI00000A67A3 | SEG:seg | : | : | : |
Description
TPR4Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ31]
Coordinates
chr1:-:1234176..1236206
Molecular Weight (calculated)
34554.6 Da
IEP (calculated)
4.036
GRAVY (calculated)
-0.598
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKSEASLSI YCDSGDGFKS EDPVTGIEEN LERTVTIGDA IDGGEFSFAK HKEEDSGEGE RGVFEEVIKK LGIGVRDELG FEIERPPSPP MHLAAGLGID
101: KFDLYGSEIK FDLPGYDDKN CGDYYKGMLE EYPLHPLLLK NYAKFLEYKG DLSGAEEYYH KCTVVEPSDG VALANYGRLV MKLHQDEAKA MSYFERAVQA
201: SPDDSIVLAA YASFLWEINA DDDDEDDDED DDESSGQGKD EFEADAAGKG KSSLSKTEDG ETLCRYAKAF WSINNDHEKA LFYFEKAVEA SPNDSIILGE
301: YARFLWEIDE
101: KFDLYGSEIK FDLPGYDDKN CGDYYKGMLE EYPLHPLLLK NYAKFLEYKG DLSGAEEYYH KCTVVEPSDG VALANYGRLV MKLHQDEAKA MSYFERAVQA
201: SPDDSIVLAA YASFLWEINA DDDDEDDDED DDESSGQGKD EFEADAAGKG KSSLSKTEDG ETLCRYAKAF WSINNDHEKA LFYFEKAVEA SPNDSIILGE
301: YARFLWEIDE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.