Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 2
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G363900.1 | Wheat | mitochondrion, plastid | 67.51 | 69.26 |
| TraesCS2A01G367000.1 | Wheat | plastid | 67.51 | 69.26 |
| Zm00001d003035_P001 | Maize | plastid | 62.82 | 62.59 |
| HORVU2Hr1G088520.1 | Barley | cytosol, nucleus, plastid | 67.15 | 62.42 |
| EES12482 | Sorghum | nucleus | 68.95 | 57.88 |
| VIT_07s0005g04340.t01 | Wine grape | cytosol, mitochondrion, nucleus | 24.91 | 57.02 |
| GSMUA_Achr1P01000_001 | Banana | plastid | 41.16 | 42.07 |
| GSMUA_Achr5P15660_001 | Banana | plastid | 39.71 | 37.93 |
| KRG95736 | Soybean | cytosol, nucleus, plastid | 27.8 | 36.15 |
| Os03t0140700-01 | Rice | plastid | 40.79 | 33.33 |
| Solyc09g064630.2.1 | Tomato | plastid | 38.99 | 30.25 |
| PGSC0003DMT400022129 | Potato | plastid | 38.99 | 30.0 |
| Os10t0576600-01 | Rice | plastid | 24.19 | 29.52 |
| KRH67454 | Soybean | nucleus | 37.18 | 28.85 |
| Os06t0606700-00 | Rice | plastid | 28.16 | 28.06 |
| CDY18241 | Canola | nucleus | 28.52 | 27.24 |
| CDX89816 | Canola | nucleus | 28.52 | 27.15 |
| AT1G04530.1 | Thale cress | cytoskeleton, cytosol, nucleus | 27.8 | 24.84 |
| Bra015324.1-P | Field mustard | nucleus | 28.52 | 24.76 |
| KRH34549 | Soybean | nucleus | 34.3 | 24.3 |
| KRG92250 | Soybean | cytosol | 33.94 | 24.29 |
| CDY59180 | Canola | cytosol | 15.16 | 23.73 |
| Os04t0496700-00 | Rice | nucleus | 16.25 | 21.84 |
| PGSC0003DMT400003940 | Potato | nucleus | 31.05 | 21.39 |
| Solyc09g090930.2.1 | Tomato | nucleus | 30.69 | 21.36 |
| VIT_05s0049g01950.t01 | Wine grape | plastid | 40.43 | 21.09 |
| Os07t0542800-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 16.25 | 18.29 |
| Solyc03g005710.1.1 | Tomato | cytosol | 24.91 | 18.25 |
| PGSC0003DMT400035002 | Potato | plastid | 40.07 | 15.68 |
| Os10t0501900-01 | Rice | plastid | 20.22 | 15.43 |
| Os01t0855200-01 | Rice | plastid | 23.47 | 12.7 |
| Os05t0447700-01 | Rice | plastid | 21.3 | 12.19 |
| Os08t0382600-00 | Rice | mitochondrion | 3.25 | 5.14 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.2 | EntrezGene:4336372 | EMBL:AK061055 | ProteinID:BAF15202.1 | ProteinID:BAS90036.1 |
| ProteinID:CAE03371.1 | ProteinID:CAE03378.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR011990 | InterPro:IPR013026 | EnsemblPlantsGene:Os04g0510600 | EnsemblPlants:Os04t0510600-01 | PFscan:PS50293 | PANTHER:PTHR26312 |
| PANTHER:PTHR26312:SF78 | UniProt:Q7X6W1 | SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | UniParc:UPI00001B169F |
| RefSeq:XP_015635678.1 | SEG:seg | : | : | : | : |
Description
endosperm-specific gene 67Tetratricopeptide-like helical domain containing protein. (Os04t0510600-01);Tetratricopeptide-like helical domain containing protein. (Os04t0510600-03)
Coordinates
chr4:-:25549282..25550600
Molecular Weight (calculated)
29841.5 Da
IEP (calculated)
4.660
GRAVY (calculated)
-0.512
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLRSSSTPF LHSFLSPSSA AAAPSSLQLR RAFSDGHLPS LHPSSDGGGG SKNNTTGLHT ELSFSIYNTF NKMAPPPPPV QEQEEAEQQQ APGEPKLPLF
101: LARGLGIDRI ASGLFTAGGG GDGDGGNGGA GRMSAVEEEH AEKVAALDAQ YKRMMDEQPG DALFLRNYAQ FLHEVKGDAR RAEEYYSRAM LADPSDGEIM
201: SQYAKLVWEV HRDLDRSLTY FHKSVQAAPH NSNVLAAYAS FLWEQDDDDN DDLGEGEQDV AVAAQPGHVR QLASVAV
101: LARGLGIDRI ASGLFTAGGG GDGDGGNGGA GRMSAVEEEH AEKVAALDAQ YKRMMDEQPG DALFLRNYAQ FLHEVKGDAR RAEEYYSRAM LADPSDGEIM
201: SQYAKLVWEV HRDLDRSLTY FHKSVQAAPH NSNVLAAYAS FLWEQDDDDN DDLGEGEQDV AVAAQPGHVR QLASVAV
001: MLLRSASTPL LNSLVHVSSP RDSPIETVES VHQIQRHRSI TLSASSSSCC YSPMSVHSSD DSSRRMKRTA SDSDLRHLTS TKPPVSKFLS GGALMEDVDE
101: GIGFGLIRTS SYDGISWALD EDTEVAGGGG GGMFHGGGKG RSGGRSDGGD GGDDNTDVHY RKMIEANPGN GIFLSNYAKF LKEVRKDYLK AEEYCGRAIL
201: VSPNDGNVLA MYAELVWKIH KDSSRAENYF NQAVAAAPED CYVQASYARF LWDAEEEEEE EKEERHEEEL EHQTSRMNFF TGPSPITAMS
101: GIGFGLIRTS SYDGISWALD EDTEVAGGGG GGMFHGGGKG RSGGRSDGGD GGDDNTDVHY RKMIEANPGN GIFLSNYAKF LKEVRKDYLK AEEYCGRAIL
201: VSPNDGNVLA MYAELVWKIH KDSSRAENYF NQAVAAAPED CYVQASYARF LWDAEEEEEE EKEERHEEEL EHQTSRMNFF TGPSPITAMS
Arabidopsis Description
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K464]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.