Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89816 | Canola | nucleus | 94.48 | 94.16 |
| AT1G04530.1 | Thale cress | cytoskeleton, cytosol, nucleus | 76.55 | 71.61 |
| CDY59180 | Canola | cytosol | 35.86 | 58.76 |
| VIT_07s0005g04340.t01 | Wine grape | cytosol, mitochondrion, nucleus | 21.03 | 50.41 |
| KRG95736 | Soybean | cytosol, nucleus, plastid | 25.86 | 35.21 |
| CDX78813 | Canola | mitochondrion | 22.76 | 28.82 |
| HORVU5Hr1G031990.1 | Barley | nucleus | 11.72 | 28.81 |
| Os04t0510600-01 | Rice | plastid | 27.24 | 28.52 |
| GSMUA_Achr1P01000_001 | Banana | plastid | 26.21 | 28.04 |
| CDY44501 | Canola | mitochondrion | 22.76 | 27.16 |
| TraesCS2D01G363900.1 | Wheat | mitochondrion, plastid | 24.83 | 26.67 |
| TraesCS2A01G367000.1 | Wheat | plastid | 24.83 | 26.67 |
| CDX75237 | Canola | plastid | 22.76 | 26.61 |
| CDX68837 | Canola | mitochondrion, plastid | 22.41 | 26.0 |
| CDY02002 | Canola | cytosol, mitochondrion, nucleus | 13.45 | 25.66 |
| Zm00001d003035_P001 | Maize | plastid | 24.48 | 25.54 |
| CDY08881 | Canola | plastid | 22.07 | 24.62 |
| CDX88849 | Canola | plastid | 22.76 | 24.54 |
| CDX76550 | Canola | plastid | 21.38 | 23.57 |
| KRH67454 | Soybean | nucleus | 28.97 | 23.53 |
| CDY60380 | Canola | plastid | 21.72 | 23.51 |
| HORVU2Hr1G088520.1 | Barley | cytosol, nucleus, plastid | 24.14 | 23.49 |
| TraesCS5A01G512000.1 | Wheat | mitochondrion, plastid | 25.17 | 23.25 |
| GSMUA_Achr5P15660_001 | Banana | plastid | 23.1 | 23.1 |
| CDY45101 | Canola | plastid | 22.07 | 22.61 |
| TraesCS4B01G342900.1 | Wheat | mitochondrion | 24.48 | 22.54 |
| EES12482 | Sorghum | nucleus | 25.52 | 22.42 |
| Os03t0140700-01 | Rice | plastid | 25.52 | 21.83 |
| CDX92483 | Canola | plastid | 20.69 | 21.43 |
| CDY35827 | Canola | plastid | 21.38 | 21.31 |
| EER92881 | Sorghum | plastid | 24.83 | 21.24 |
| PGSC0003DMT400022129 | Potato | plastid | 25.86 | 20.83 |
| Solyc09g064630.2.1 | Tomato | plastid | 25.17 | 20.45 |
| HORVU4Hr1G084230.1 | Barley | mitochondrion, plastid | 23.79 | 20.23 |
| Zm00001d027613_P002 | Maize | plastid | 24.83 | 20.22 |
| CDY37568 | Canola | nucleus | 21.03 | 19.43 |
| CDY41120 | Canola | mitochondrion | 20.34 | 19.22 |
| CDY39992 | Canola | nucleus | 19.31 | 18.3 |
| CDX87295 | Canola | nucleus | 15.52 | 17.79 |
| CDY51354 | Canola | plastid | 17.59 | 10.58 |
| CDX97868 | Canola | plastid | 18.28 | 10.56 |
| CDY09927 | Canola | plastid | 17.24 | 10.1 |
| CDY06247 | Canola | plastid | 17.24 | 10.1 |
| CDX99068 | Canola | plastid | 15.86 | 10.04 |
| CDY06694 | Canola | plastid | 16.55 | 9.34 |
| CDY10264 | Canola | plastid | 16.55 | 9.28 |
| CDX86126 | Canola | plastid | 15.52 | 9.26 |
| CDY38075 | Canola | plastid | 13.1 | 8.96 |
| CDY58299 | Canola | plastid | 14.83 | 8.87 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.2 | GO:A0A078FYX6 | UniProt:A0A078FYX6 | EnsemblPlants:CDY18241 | ProteinID:CDY18241 |
| ProteinID:CDY18241.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006396 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00002771001 | InterPro:HAT | InterPro:IPR011990 |
| InterPro:IPR013026 | InterPro:IPR019734 | PFAM:PF13181 | PFscan:PS50293 | PANTHER:PTHR26312 | PANTHER:PTHR26312:SF89 |
| SMART:SM00386 | SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat | UniParc:UPI0004EF31A6 |
| SEG:seg | : | : | : | : | : |
Description
BnaC05g02640DBnaC05g02640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FYX6]
Coordinates
chrLK032083:-:478506..480144
Molecular Weight (calculated)
32753.4 Da
IEP (calculated)
3.999
GRAVY (calculated)
-0.630
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKSEPSLSI YCESGLNPVT GTDENLDRTV SIGDSVEADF SFAKHTSSSI DALSIKEEDE KSFEIERPPM HLAAGLGIDK FDDLYGGEIS FDLPSLDDER
101: CGDYYERMLE EYPLHPLLLR NYANFLEYKG DVNGAEEYYH KCTVVEPSDG VALANYGRLV MELHKDEAKA LSYFERAVQA SPEDSNVLGA YASFLWEIND
201: EDDDEGDDDA FGDRTRQGKE DFEPEAGEKR SSRLSETEEG ETLCRYAKAF WSINGDKEKA LFYFEKAVEA SPSDSIILGE YARFLWEIEE
101: CGDYYERMLE EYPLHPLLLR NYANFLEYKG DVNGAEEYYH KCTVVEPSDG VALANYGRLV MELHKDEAKA LSYFERAVQA SPEDSNVLGA YASFLWEIND
201: EDDDEGDDDA FGDRTRQGKE DFEPEAGEKR SSRLSETEEG ETLCRYAKAF WSINGDKEKA LFYFEKAVEA SPSDSIILGE YARFLWEIEE
001: MLKSEASLSI YCDSGDGFKS EDPVTGIEEN LERTVTIGDA IDGGEFSFAK HKEEDSGEGE RGVFEEVIKK LGIGVRDELG FEIERPPSPP MHLAAGLGID
101: KFDLYGSEIK FDLPGYDDKN CGDYYKGMLE EYPLHPLLLK NYAKFLEYKG DLSGAEEYYH KCTVVEPSDG VALANYGRLV MKLHQDEAKA MSYFERAVQA
201: SPDDSIVLAA YASFLWEINA DDDDEDDDED DDESSGQGKD EFEADAAGKG KSSLSKTEDG ETLCRYAKAF WSINNDHEKA LFYFEKAVEA SPNDSIILGE
301: YARFLWEIDE
101: KFDLYGSEIK FDLPGYDDKN CGDYYKGMLE EYPLHPLLLK NYAKFLEYKG DLSGAEEYYH KCTVVEPSDG VALANYGRLV MKLHQDEAKA MSYFERAVQA
201: SPDDSIVLAA YASFLWEINA DDDDEDDDED DDESSGQGKD EFEADAAGKG KSSLSKTEDG ETLCRYAKAF WSINNDHEKA LFYFEKAVEA SPNDSIILGE
301: YARFLWEIDE
Arabidopsis Description
TPR4Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ31]
SUBAcon: [cytoskeleton,nucleus,cytosol]
SUBAcon: [cytoskeleton,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.