CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018168.1-P	Field mustard	plastid	99.56	99.56
CDX86126	Canola	plastid	93.23	87.86
AT3G47080.1	Thale cress	plastid	80.13	71.26
CDY58299	Canola	plastid	73.14	69.07
CDY38075	Canola	plastid	63.54	68.63
CDY02002	Canola	cytosol, mitochondrion, nucleus	20.74	62.5
CDX97868	Canola	plastid	50.0	45.62
CDY51354	Canola	plastid	47.6	45.23
VIT_06s0004g06290.t01	Wine grape	plastid	51.75	44.8
KRH46437	Soybean	plastid	49.78	43.43
KRG98335	Soybean	plastid	50.0	43.05
CDY10264	Canola	plastid	48.25	42.75
CDY06694	Canola	plastid	47.82	42.61
Solyc06g076850.2.1	Tomato	plastid	50.66	42.11
CDY09927	Canola	plastid	45.41	42.02
CDY06247	Canola	plastid	45.41	42.02
PGSC0003DMT400078227	Potato	plastid	49.78	41.23
GSMUA_Achr8P02280_001	Banana	plastid	38.43	35.2
GSMUA_Achr9P03650_001	Banana	plastid	38.43	34.71
TraesCS3B01G400100.1	Wheat	plastid	36.03	34.45
TraesCS3D01G361500.1	Wheat	plastid	36.03	34.38
Os05t0447700-01	Rice	plastid	36.24	34.3
HORVU3Hr1G084970.2	Barley	plastid	35.81	33.95
TraesCS3A01G368600.1	Wheat	plastid	35.59	33.89
TraesCS1D01G277900.1	Wheat	plastid	34.72	33.54
GSMUA_Achr11P...	Banana	plastid	36.46	33.47
TraesCS1A01G278600.1	Wheat	plastid	34.28	33.4
TraesCS1B01G287500.1	Wheat	plastid	34.72	33.19
GSMUA_Achr6P33690_001	Banana	plastid	38.21	32.77
Zm00001d012325_P001	Maize	plastid	36.46	32.36
Os01t0855200-01	Rice	plastid	36.03	32.23
Zm00001d042812_P001	Maize	plastid	35.81	31.36
HORVU1Hr1G073460.2	Barley	plastid	34.72	31.05
KXG22120	Sorghum	plastid	34.28	30.78
Zm00001d010075_P001	Maize	plastid	34.93	30.48
EES01775	Sorghum	plastid	34.93	30.19
Zm00001d038274_P002	Maize	plastid	32.97	30.08
GSMUA_Achr5P28840_001	Banana	cytosol	34.5	28.16
CDX75237	Canola	plastid	11.35	20.97
CDY45101	Canola	plastid	12.66	20.49
CDY44501	Canola	mitochondrion	10.7	20.16
CDX68837	Canola	mitochondrion, plastid	10.92	20.0
CDX92483	Canola	plastid	12.23	20.0
CDY35827	Canola	plastid	12.45	19.59
CDY60380	Canola	plastid	11.35	19.4
CDX78813	Canola	mitochondrion	9.61	19.21
CDX76550	Canola	plastid	10.92	19.01
CDY08881	Canola	plastid	10.7	18.85
CDX88849	Canola	plastid	10.92	18.59
CDY59180	Canola	cytosol	6.77	17.51
CDX89816	Canola	nucleus	10.26	16.15
CDY39992	Canola	nucleus	10.7	16.01
CDY41120	Canola	mitochondrion	10.7	15.96
CDY37568	Canola	nucleus	10.92	15.92
CDY18241	Canola	nucleus	10.04	15.86
CDX87295	Canola	nucleus	8.73	15.81

Protein Annotations

EnsemblPlants:CDX99068	EnsemblPlantsGene:GSBRNA2T00107206001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312	PANTHER:PTHR26312:SF87
PFscan:PS50293	ProteinID:CDX99068	ProteinID:CDX99068.1	SEG:seg	SUPFAM:SSF48452	UniParc:UPI0004EEA21E
MapMan:35.2	:	:	:	:	:

Description

BnaA06g17590D

Coordinates

chrLK031908:+:159408..161246

Molecular Weight (calculated)

51479.2 Da

IEP (calculated)

6.610

GRAVY (calculated)

-0.331

Length

458 amino acids

Sequence
(BLAST)

001: MDVKVATTTS FHWSGRHAAI PSLSQTLTSS KRRRSRGRGG GSLSSCQTRL KASTFLGTQS GKLHRSKSCE LLEFSTKTKL YPLRRVCSAS SGFFSDEEFS
101: AKMQELAIQF KIAGEEEDKV VVVGNDRRNH RFGNAKLLLH ESVPGLASLE APWMEMVSHS SIERKANRVD LPLSLRMIKR KLQEEALREA RESTYCSIDK
201: AFSSLVFMIE EMHSFALQTR EGVVQQVKKD MHASLLWMFQ RVFSQTPTLM VYVMILLANF TVHSVASNLA IAESPPGSAG TKEDSVLGQG IREEELSLWN
301: SMVEEADQMQ GSPVDRDMRL RLVSPIIARV ALDDNANYTR TELFYKIGLA QEPNNPLLLA NYAQFLYLVS QDYDRAEKCF KKAIESGEAD AEAYSKYAIF
401: QWKVRKDLWA AEENFLEAIS ADPTNSFYAA SYANFLWQTG GEETCFPLES SDSPQEIA

Best Arabidopsis Sequence Match ( AT3G47080.1 )
(BLAST)

001: MEVKVATTTS FHWSGRHTAI PQCPSFSQTL TSSKRRRSRG IAGDVSVGGG SLRLKPSTFL GTQSGKLHRS KSCELWQFSN STTKKIRTDV KKKHNPLRRV
101: CSASSGFFSS DEAFSVKMQE LASQFRNAGD EEEEENKQKS EAVDNDNDSN NHRFGSLKLL QESVPGLASL EAPWAEMVNH SSIERKANSV DLPLSLRIIK
201: RKLQEEALKK ASATTYCSIN RAFSSMVFMI EELHSFALQT RVGVLKQVKK EMHASLLWIF QRVFSQTPTL MVYVMILLAN YTVHSVASNL PIAASPPVVN
301: KGPDQTQQRI DFSSLKESTK LDGSKWLGSI NFDKVSHLPR HRDSVSGEGM REEEVSLWNS MVEEADQMQD SSVDRDMRLR LVSPITARIE LDDYANYTRT
401: ELLYKIGLAQ EPDNHLLLAN YAQFLYLVTQ DHERAENCFK KAIESEDVDA ETYSKYAIFL WKVRNDLWAA EENFLEAISA DPTNSFYAAN YANFLWNTGG
501: EETCFPLEDS TQEMV

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SD65]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.