CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46437	Soybean	plastid	89.47	90.67
CDY02002	Canola	cytosol, mitochondrion, nucleus	18.98	66.45
VIT_06s0004g06290.t01	Wine grape	plastid	65.04	65.41
Solyc06g076850.2.1	Tomato	plastid	60.34	58.26
PGSC0003DMT400078227	Potato	plastid	60.15	57.87
CDY51354	Canola	plastid	52.07	57.47
Bra039995.1-P	Field mustard	plastid	52.44	57.41
CDX97868	Canola	plastid	53.57	56.77
Bra018368.1-P	Field mustard	plastid	49.44	56.32
AT2G29670.2	Thale cress	plastid	55.26	54.85
CDY06694	Canola	plastid	52.82	54.67
Bra015570.1-P	Field mustard	plastid	52.44	54.28
CDY10264	Canola	plastid	52.63	54.16
Bra031567.1-P	Field mustard	plastid	49.06	52.73
CDY06247	Canola	plastid	49.06	52.73
AT1G07280.1	Thale cress	plastid	54.51	52.54
CDY09927	Canola	plastid	48.12	51.72
GSMUA_Achr8P02280_001	Banana	plastid	47.37	50.4
CDX99068	Canola	plastid	43.05	50.0
Bra018168.1-P	Field mustard	plastid	43.05	50.0
GSMUA_Achr9P03650_001	Banana	plastid	46.8	49.11
CDX86126	Canola	plastid	44.36	48.56
Bra019495.1-P	Field mustard	plastid	41.54	47.73
AT3G47080.1	Thale cress	plastid	45.3	46.8
Os05t0447700-01	Rice	plastid	42.48	46.69
GSMUA_Achr11P...	Banana	plastid	43.42	46.29
GSMUA_Achr6P33690_001	Banana	plastid	46.24	46.07
CDY38075	Canola	plastid	36.65	45.99
Os01t0855200-01	Rice	plastid	44.17	45.9
TraesCS3D01G361500.1	Wheat	plastid	41.35	45.83
TraesCS1D01G277900.1	Wheat	plastid	40.79	45.78
CDY58299	Canola	plastid	41.73	45.77
TraesCS3B01G400100.1	Wheat	plastid	41.17	45.72
TraesCS1B01G287500.1	Wheat	plastid	40.98	45.51
HORVU3Hr1G084970.2	Barley	plastid	41.17	45.34
TraesCS3A01G368600.1	Wheat	plastid	40.98	45.32
TraesCS1A01G278600.1	Wheat	plastid	39.29	44.47
Zm00001d012325_P001	Maize	plastid	42.86	44.19
Zm00001d042812_P001	Maize	plastid	43.42	44.17
EES01775	Sorghum	plastid	43.42	43.58
KXG22120	Sorghum	plastid	40.79	42.55
Zm00001d038274_P002	Maize	plastid	39.1	41.43
HORVU1Hr1G073460.2	Barley	plastid	39.85	41.41
Zm00001d010075_P001	Maize	plastid	40.6	41.14
KRH73162	Soybean	mitochondrion	36.84	40.66
KRH14978	Soybean	cytosol, plastid	34.59	38.57
GSMUA_Achr5P28840_001	Banana	cytosol	40.6	38.5
KRH03683	Soybean	plastid	13.16	26.82
KRH20249	Soybean	plastid	12.59	26.07
KRG95736	Soybean	cytosol, nucleus, plastid	9.77	24.41
KRH39558	Soybean	plastid	11.28	23.72
KRH09728	Soybean	cytosol	4.89	23.01
KRH23575	Soybean	plastid	11.09	22.96
KRH44461	Soybean	plastid	13.35	22.54
KRH74400	Soybean	nucleus, plastid	11.65	21.31
KRH47446	Soybean	plastid	12.41	20.95
KRH67454	Soybean	nucleus	12.03	17.93
KRH34549	Soybean	nucleus	9.77	13.3
KRG92250	Soybean	cytosol	9.59	13.18

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100799508	MapMan:35.2	EMBL:ACUP02010876	EnsemblPlantsGene:GLYMA_18G066500	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	InterPro:HAT	UniProt:I1N026	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
EnsemblPlants:KRG98335	ProteinID:KRG98335	ProteinID:KRG98335.1	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR26312
PANTHER:PTHR26312:SF83	SMART:SM00386	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
UniParc:UPI000233F0E0	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:6122806..6126341

Molecular Weight (calculated)

59686.7 Da

IEP (calculated)

4.882

GRAVY (calculated)

-0.403

Length

532 amino acids

Sequence
(BLAST)

001: MGIKVMQLSQ PVLPHSPSSS HTLASAIFSP SSSKTRTLVC RFVHRSSLFP TTTTRLLRRT KSFEQHALFT RRGNIRRACS ASLEPFSDEE FAKKIEDLAL
101: KFQLSDDATT NANDLESEDF QEISSTVNFA EEFEPPEEII PANIERKANS VELPFSLRII KKKLQWKEGF REAGESAYCS VKKAFSSMVF IIRELHSFTL
201: QMREVLFYED LQGILERVQN EMHASFVWLF QQVFSHTPTL MVYVMILLAN FTVYSMGNNA AIAAVAPPPV STVTEAHDQR GHIRGHNIDS SAIKTFSVSN
301: GKITAYVGGG NGGGGKVRPA ANGTDGDGRF DRSRHGTVFS DGGASTQAYK TGEKTESVSG QEEEEEENLW NAMVEEASRM EVSWRGKDLD SDVMKRFVSP
401: VMASIESDDY AEYLRTELVY QTGLSQDPNN TLLLANYAQF LYLVAHDYDR AEEFFKRAIE VEPPDAEAYN KYATFLWKVK NDLWAAEETY LEAISADPNN
501: SFYAANYAHF LWNTGGEDTC FPLSSPDNSQ EV

Best Arabidopsis Sequence Match ( AT2G29670.2 )
(BLAST)

001: MGVKVASSST FLQWTTQPII HQSSSPSQTL ASGTITSPSK RRSTVHDGRF LSCRFVTQRL NRSALFGTPS TKLHRPKSCE LWKSSSSSSR PIKTQSFRRV
101: YSANLDPFSD EEFSKKIQEL TLRFNIPHHD DDENSIEPPW NEMVHLSSIE MKANSVDLPL SLRIIKKKRQ WEEGVKQAGE SACCSMNKAF SSMVFMIREL
201: QSFTLHMREI LFYEDLQEIL LRVREEMQQS FVWLFQQVFS ATPTLMVYVM ILLANFTVYS IGNNSSALAA VAPLPPTITE LTTVSETEET NVKFDSSVVK
301: TFFVSSPSGS IASVGGNNNG GGGNVKPVLS GTDGDGSDGS EQFRTIIPEG VSQLSSSNFG SEPSVSGQDE HRLWNSMVEE AERMQYSNID DSLDQETRKR
401: FVSHVEARVE AEEDTGYFKT ELMYQTELSQ EPNNPLLLAN YAQFLYLVSN DHDRAEEYFK RAVGVEPKDA EAFSKYATFL WRARDDLWAA EETFLEAIDA
501: DPTNSYYAAN YANFLWNTGG DDTCFPLDDE SHEDTI

Arabidopsis Description

At2g29670/T27A16.23 [Source:UniProtKB/TrEMBL;Acc:O82388]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.