Factsheet for PGSC0003DMT400078227

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g076850.2.1	Tomato	plastid	96.56	96.91
VIT_06s0004g06290.t01	Wine grape	plastid	62.57	65.41
CDY02002	Canola	cytosol, mitochondrion, nucleus	16.82	61.18
KRG98335	Soybean	plastid	57.87	60.15
KRH46437	Soybean	plastid	56.06	59.05
CDX97868	Canola	plastid	51.18	56.37
CDY51354	Canola	plastid	49.01	56.22
Bra039995.1-P	Field mustard	plastid	49.01	55.76
Bra018368.1-P	Field mustard	plastid	46.84	55.46
AT2G29670.2	Thale cress	plastid	52.98	54.66
AT1G07280.1	Thale cress	plastid	54.07	54.17
CDY06694	Canola	plastid	50.09	53.89
Bra015570.1-P	Field mustard	plastid	50.09	53.89
CDY10264	Canola	plastid	49.73	53.19
Bra031567.1-P	Field mustard	plastid	47.02	52.53
CDY06247	Canola	plastid	47.02	52.53
CDY09927	Canola	plastid	46.47	51.92
Bra018168.1-P	Field mustard	plastid	41.41	50.0
GSMUA_Achr8P02280_001	Banana	plastid	45.03	49.8
CDX99068	Canola	plastid	41.23	49.78
CDX86126	Canola	plastid	42.13	47.94
GSMUA_Achr9P03650_001	Banana	plastid	43.76	47.73
Bra019495.1-P	Field mustard	plastid	39.78	47.52
AT3G47080.1	Thale cress	plastid	43.76	46.99
GSMUA_Achr11P...	Banana	plastid	42.31	46.89
Os01t0855200-01	Rice	plastid	43.4	46.88
CDY58299	Canola	plastid	41.05	46.8
CDY38075	Canola	plastid	35.08	45.75
TraesCS3B01G400100.1	Wheat	plastid	39.6	45.72
TraesCS3D01G361500.1	Wheat	plastid	39.6	45.62
TraesCS3A01G368600.1	Wheat	plastid	39.6	45.53
Zm00001d012325_P001	Maize	plastid	42.31	45.35
HORVU3Hr1G084970.2	Barley	plastid	39.6	45.34
Zm00001d042812_P001	Maize	plastid	42.5	44.93
EES01775	Sorghum	plastid	42.68	44.53
Os05t0447700-01	Rice	plastid	38.7	44.21
GSMUA_Achr6P33690_001	Banana	plastid	42.68	44.19
TraesCS1D01G277900.1	Wheat	plastid	37.43	43.67
TraesCS1A01G278600.1	Wheat	plastid	37.07	43.62
TraesCS1B01G287500.1	Wheat	plastid	37.61	43.42
PGSC0003DMT400069757	Potato	plastid	33.82	41.83
KXG22120	Sorghum	plastid	37.97	41.18
Zm00001d038274_P002	Maize	plastid	36.89	40.64
HORVU1Hr1G073460.2	Barley	plastid	37.25	40.23
Zm00001d010075_P001	Maize	plastid	37.07	39.05
GSMUA_Achr5P28840_001	Banana	cytosol	38.88	38.32
PGSC0003DMT400073455	Potato	plastid	10.85	25.1
PGSC0003DMT400079441	Potato	plastid	9.22	21.98
PGSC0003DMT400001660	Potato	mitochondrion, nucleus, plastid	12.12	20.94
PGSC0003DMT400045174	Potato	plastid	11.03	20.2
PGSC0003DMT400022129	Potato	plastid	11.57	17.78
PGSC0003DMT400003940	Potato	nucleus	9.22	12.69
PGSC0003DMT400035002	Potato	plastid	12.84	10.03

Protein Annotations

EnsemblPlants:PGSC0003DMT400078227	EnsemblPlantsGene:PGSC0003DMG400030441	EntrezGene:102586166	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312
PANTHER:PTHR26312:SF83	PFscan:PS50293	PGSC:PGSC0003DMG400030441	RefSeq:XP_006350828.1	SEG:seg	SUPFAM:SSF48452
UniParc:UPI0002962166	UniProt:M1CZN9	MapMan:35.2	:	:	:

Description

Binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030441]

Coordinates

chr6:-:57111860..57115524

Molecular Weight (calculated)

62252.6 Da

IEP (calculated)

4.877

GRAVY (calculated)

-0.480

Length

553 amino acids

Sequence
(BLAST)

001: MGVKVATTCL QWAQPFVPHS TSSSSQTFAS AISSPSSSKR HSFSRKGSLI CRYVHRPDKS ALFGTQLLNL YRSKSCEQLK PRTRTIRRAS STSASLDSFS
101: DEEFSKEIQE LAKKFQLSDV ENPSTISSQS DSMETRDESI SSDSYDIKFL ENQRPFDPLE QPDWPERDEI IPANIEWKAN SVDLPFSLRI IKRKKQWQDG
201: VRDTGESAYC SVKKAFSNMV FIIRELQSYT LQMRELLFYE DLQGILVRVQ KEMHASFVWL FQQVFSHTPT LMVYVMILLA NYSVHSMASS AAIAATPPPL
301: TETVSTLDES HFNQKFDSSA IKTFSVSSSS GKVTSIGGGN GGGSYKPIAS GNDGDGRFDG QMSNGISSIE RGRVGEEECV SGQETTEEEL QIWNSIVDEA
401: SKMQASVRDE SLDHETMQRF VSPINANIEV GNYAEYIKTE LLYLVELKQE PQNTLLLTNY AQFLFLVAQD YDRAEKYFKK AAEVEPKDAE ALNKYANFLW
501: KVRKDLWAAE ETFNQAIAAE PSNNFYAANY AHFLWNTGGE DTCYPLDSSN TDL

Best Arabidopsis Sequence Match ( AT2G29670.2 )
(BLAST)

001: MGVKVASSST FLQWTTQPII HQSSSPSQTL ASGTITSPSK RRSTVHDGRF LSCRFVTQRL NRSALFGTPS TKLHRPKSCE LWKSSSSSSR PIKTQSFRRV
101: YSANLDPFSD EEFSKKIQEL TLRFNIPHHD DDENSIEPPW NEMVHLSSIE MKANSVDLPL SLRIIKKKRQ WEEGVKQAGE SACCSMNKAF SSMVFMIREL
201: QSFTLHMREI LFYEDLQEIL LRVREEMQQS FVWLFQQVFS ATPTLMVYVM ILLANFTVYS IGNNSSALAA VAPLPPTITE LTTVSETEET NVKFDSSVVK
301: TFFVSSPSGS IASVGGNNNG GGGNVKPVLS GTDGDGSDGS EQFRTIIPEG VSQLSSSNFG SEPSVSGQDE HRLWNSMVEE AERMQYSNID DSLDQETRKR
401: FVSHVEARVE AEEDTGYFKT ELMYQTELSQ EPNNPLLLAN YAQFLYLVSN DHDRAEEYFK RAVGVEPKDA EAFSKYATFL WRARDDLWAA EETFLEAIDA
501: DPTNSYYAAN YANFLWNTGG DDTCFPLDDE SHEDTI

Arabidopsis Description

At2g29670/T27A16.23 [Source:UniProtKB/TrEMBL;Acc:O82388]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.