Factsheet for PGSC0003DMT400045174

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g076730.2.1	Tomato	plastid	91.72	91.72
Bra013269.1-P	Field mustard	mitochondrion	42.05	55.46
CDX78813	Canola	mitochondrion	41.72	55.02
CDY44501	Canola	mitochondrion	43.05	53.5
VIT_02s0012g01590.t01	Wine grape	nucleus	36.42	51.16
KRH39558	Soybean	plastid	41.72	49.8
CDY08881	Canola	plastid	42.38	49.23
Bra021028.1-P	Field mustard	plastid	42.72	49.05
CDX76550	Canola	plastid	42.72	49.05
AT4G17940.1	Thale cress	mitochondrion	43.05	47.45
KRH74400	Soybean	nucleus, plastid	44.04	45.7
GSMUA_Achr4P27320_001	Banana	plastid	40.07	45.66
GSMUA_Achr5P03500_001	Banana	plastid	36.42	44.18
Os10t0576600-01	Rice	plastid	30.46	40.53
TraesCS1A01G194200.1	Wheat	plastid	31.13	39.83
TraesCS1B01G209200.1	Wheat	plastid	31.13	39.66
Zm00001d030086_P001	Maize	plastid	30.13	36.55
EER91874	Sorghum	plastid	29.14	34.11
PGSC0003DMT400073455	Potato	plastid	26.16	33.05
PGSC0003DMT400079441	Potato	plastid	24.5	31.9
PGSC0003DMT400001660	Potato	mitochondrion, nucleus, plastid	29.14	27.5
PGSC0003DMT400022129	Potato	plastid	27.81	23.33
HORVU1Hr1G050780.2	Barley	plastid	26.82	21.26
PGSC0003DMT400003940	Potato	nucleus	19.21	14.43
PGSC0003DMT400069757	Potato	plastid	17.88	12.08
PGSC0003DMT400078227	Potato	plastid	20.2	11.03
PGSC0003DMT400035002	Potato	plastid	24.17	10.31

Protein Annotations

EnsemblPlants:PGSC0003DMT400045174	EnsemblPlantsGene:PGSC0003DMG400017523	EntrezGene:102603188	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR26312
PANTHER:PTHR26312:SF53	PFscan:PS50293	PGSC:PGSC0003DMG400017523	RefSeq:XP_006352873.1	SEG:seg	SUPFAM:SSF48452
UniParc:UPI000294992D	UniProt:M1BH78	MapMan:35.2	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400017523]

Coordinates

chr8:-:49348024..49349523

Molecular Weight (calculated)

32835.1 Da

IEP (calculated)

4.728

GRAVY (calculated)

-0.596

Length

302 amino acids

Sequence
(BLAST)

001: MRTVLFRTGS GSIPAVIPGS PRVSVPGRES IGKVFNGEKK KKGCSSPMIS LSSEVNRRGI RRVSSESDVI RSGFEGSSVT RKLSKIGSRS LSSKIPEEDC
101: GSEQNELEVL QSIGSLSLTE DLRSYAGDWN RNSIPVDELV FPGGGIGSTK NRKFGGNGGG RDEFDADSLT GGNSDPRKIG AYYKEMLNSD PMNSLLLRNY
201: GKYLHEVERD FVKAEECYGR AILASPGDGE VLSLYGKLVW ETQRDENRAK SYFDQAVHAS PNDCTVLGSY AHFMWEAEGE EDEDEDDEIE TVGAGASTVA
301: AY

Best Arabidopsis Sequence Match ( AT4G17940.1 )
(BLAST)

001: MKSLLMRTGS MPVLQNRLIS GGSSRKMTPI SRTNSVESLS SYGERFAGGK ISIEVKANVG MRRVLSESDV IRSERMLKRV GSKPSPARIP EDDEAGEEEI
101: RFADGWGSMI SGGLPVEEKC FTGGGVGGGS GYSGGYGNGG GGGYEDKSKI GDYYREMLRS NPNNSLLLMN YGKFLYEVEK DAEGAEEYYG RAILENPGDG
201: EALSMYGRLI WETKRDEKRA QGYFDQAVNA SPNDCMVLGS YARFMWEAED DDDDDEEEEE EEWMAASPLM VSAV

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WUZ1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.